Sequence filename : /auto/dufayard/res/2.4.5/nucleic_M2564_142x1130_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 71891040 . Log(lk) : * -> -22486.915215 . Log(lk) : -22486.915215 -> -22001.826530 14 swaps done . Log(lk) : -22001.826530 -> -21928.001036 13 swaps done . Log(lk) : -21928.001036 -> -21905.330106 9 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20572.248031 -> -20522.976846 7 swaps done . Log(lk) : -20522.976846 -> -20509.169859 6 swaps done . Log(lk) : -20509.169859 -> -20501.466958 4 swaps done . Log(lk) : -20501.466958 -> -20497.430662 3 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20489.107028 -> -20486.824603 2 swaps done . Log(lk) : -20486.824603 -> -20484.863044 1 swap done . Log(lk) : -20484.863044 -> -20484.115107 2 swaps done . Log(lk) : -20484.115107 -> -20483.245549 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20483.102791 -> -20482.686380 2 swaps done . Log(lk) : -20482.686380 -> -20480.251718 2 swaps done . Log(lk) : -20480.251718 -> -20475.285907 3 swaps done . Log(lk) : -20475.285907 -> -20465.194503 3 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20465.156387 -> -20456.820214 4 swaps done . Log(lk) : -20456.820214 -> -20455.401305 2 swaps done . Log(lk) : -20455.401305 -> -20455.259315 0 swap done . Log(lk) : -20455.259315 -> -20455.229121 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20455.219506 -> -20455.208794 0 swap done . Log(lk) : -20455.208794 -> -20455.204389 0 swap done . Log(lk) : -20455.204389 -> -20455.202198 0 swap done . Log(lk) : -20455.202198 -> -20455.200998 0 swap done . Last optimization step... . Log(lk) : * -> -20455.200025 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20455.200025 -> -20455.199261 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20455.199261 -> -20455.199056 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20455.199056 -> -20455.198995 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20455.198995 -> -20455.198975 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20455.198975 -> -20455.198970 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20455.198970 -> -20455.198968 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20455.198968 -> -20455.198967 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -20455.198967 -> -20455.198967 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -20455.198967 . Time used 0h4m1s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 239.02user 0.00system 4:01.29elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps