Sequence filename : 				 /auto/dufayard/res/2.4.5/nucleic_M2566_73x918_2006.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. 1 sites are made from completely undetermined states ('X', '-', '?' or 'N')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 25375064

. Log(lk) :               * ->   -13493.814977 
. Log(lk) :   -13493.814977 ->   -13238.681637   7 swaps done 
. Log(lk) :   -13238.681637 ->   -13205.928156   5 swaps done 
. Log(lk) :   -13205.928156 ->   -13197.275690   3 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12052.561221 ->   -12032.350264   5 swaps done 
. Log(lk) :   -12032.350264 ->   -12015.780697   1 swap  done
. Log(lk) :   -12015.780697 ->   -12010.694070   1 swap  done
. Log(lk) :   -12010.694070 ->   -12009.478674   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12004.405935 ->   -12003.699668   0 swap  done
. Log(lk) :   -12003.699668 ->   -12003.410847   0 swap  done
. Log(lk) :   -12003.410847 ->   -12003.279645   0 swap  done
. Log(lk) :   -12003.279645 ->   -12003.218260   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12003.180164 ->   -12003.138103   0 swap  done

. Last optimization step...

. Log(lk) :               * ->   -12003.109311 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12003.109311 ->   -12003.098917 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12003.098917 ->   -12003.096820 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12003.096820 ->   -12003.096330 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12003.096330 ->   -12003.096237 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12003.096237 ->   -12003.096219 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12003.096219 ->   -12003.096215 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12003.096215 ->   -12003.096214 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -12003.096214 


. Time used 0h0m45s

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44.51user 0.00system 0:45.05elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps