Sequence filename : /auto/dufayard/res/2.4.5/nucleic_M2572_191x990_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 35428920 . Log(lk) : * -> -3552.996184 . Log(lk) : -3552.996184 -> -3529.256737 20 swaps done . Log(lk) : -3529.256737 -> -3525.773693 12 swaps done . Log(lk) : -3525.773693 -> -3525.448920 8 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3509.096065 -> -3508.664407 8 swaps done . Log(lk) : -3508.664407 -> -3508.602546 8 swaps done . Log(lk) : -3508.602546 -> -3508.585879 9 swaps done . Log(lk) : -3508.585879 -> -3508.580589 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3508.442151 -> -3508.438560 5 swaps done . Log(lk) : -3508.438560 -> -3508.437474 5 swaps done . Log(lk) : -3508.437474 -> -3508.437108 1 swap done . Last optimization step... . Log(lk) : * -> -3508.436941 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3508.436941 -> -3508.436424 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3508.436424 -> -3508.436410 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3508.436410 -> -3508.436408 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -3508.436408 -> -3508.436408 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -3508.436408 . Time used 0h0m52s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 50.70user 0.00system 0:52.35elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps