Sequence filename : /auto/dufayard/res/2.4.5/nucleic_M2599_66x1137_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 5542872 . Log(lk) : * -> -2179.213530 . Log(lk) : -2179.213530 -> -2176.206077 10 swaps done . Log(lk) : -2176.206077 -> -2175.591615 9 swaps done . Log(lk) : -2175.591615 -> -2175.193451 3 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2163.807520 -> -2163.656173 1 swap done . Log(lk) : -2163.656173 -> -2163.621475 0 swap done . Log(lk) : -2163.621475 -> -2163.613362 1 swap done . Log(lk) : -2163.613362 -> -2163.611272 3 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2163.610488 -> -2163.610260 0 swap done . Last optimization step... . Log(lk) : * -> -2163.610197 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2163.610197 -> -2163.610160 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2163.610160 -> -2163.610158 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2163.610158 -> -2163.610158 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -2163.610157 . Time used 0h0m6s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 6.38user 0.00system 0:06.60elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps