Sequence filename : /auto/dufayard/res/2.4.5/nucleic_M2627_54x1915_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 44737560 . Log(lk) : * -> -38236.719942 . Log(lk) : -38236.719942 -> -37838.985352 4 swaps done . Log(lk) : -37838.985352 -> -37810.200636 2 swaps done . Log(lk) : -37810.200636 -> -37804.143369 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35354.422674 -> -35319.566174 2 swaps done . Log(lk) : -35319.566174 -> -35310.835695 1 swap done . Log(lk) : -35310.835695 -> -35309.064098 0 swap done . Log(lk) : -35309.064098 -> -35308.173036 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35270.444996 -> -35265.580540 0 swap done . Log(lk) : -35265.580540 -> -35263.270123 0 swap done . Log(lk) : -35263.270123 -> -35261.847248 0 swap done . Log(lk) : -35261.847248 -> -35260.925103 0 swap done . Last optimization step... . Log(lk) : * -> -35259.943811 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35259.943811 -> -35256.525707 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35256.525707 -> -35255.263090 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35255.263090 -> -35254.441151 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35254.441151 -> -35253.928121 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.928121 -> -35253.632951 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.632951 -> -35253.443894 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.443894 -> -35253.331824 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.331824 -> -35253.258358 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.258358 -> -35253.213977 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.213977 -> -35253.184450 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.184450 -> -35253.166352 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.166352 -> -35253.154224 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.154224 -> -35253.146757 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.146757 -> -35253.141728 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.141728 -> -35253.138618 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.138618 -> -35253.136520 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.136520 -> -35253.135220 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.135220 -> -35253.134339 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.134339 -> -35253.133791 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.133791 -> -35253.133419 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.133419 -> -35253.133185 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.133185 -> -35253.133023 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.133023 -> -35253.132921 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.132921 -> -35253.132831 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.132831 -> -35253.132789 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.132789 -> -35253.132765 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.132765 -> -35253.132747 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.132747 -> -35253.132735 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.132735 -> -35253.132729 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.132729 -> -35253.132725 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.132725 -> -35253.132721 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.132721 -> -35253.132720 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -35253.132720 -> -35253.132719 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -35253.132719 . Time used 0h2m30s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 148.97user 0.00system 2:29.78elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps