Sequence filename : /auto/dufayard/res/2.4.5/nucleic_M2675_51x1537_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 19710504 . Log(lk) : * -> -8480.308115 . Log(lk) : -8480.308115 -> -8360.357515 4 swaps done . Log(lk) : -8360.357515 -> -8343.930358 4 swaps done . Log(lk) : -8343.930358 -> -8341.630521 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7905.127608 -> -7886.706641 1 swap done . Log(lk) : -7886.706641 -> -7883.765526 1 swap done . Log(lk) : -7883.765526 -> -7882.527378 0 swap done . Log(lk) : -7882.527378 -> -7881.945320 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.781798 -> -7878.476378 0 swap done . Log(lk) : -7878.476378 -> -7878.367653 0 swap done . Log(lk) : -7878.367653 -> -7878.324951 0 swap done . Log(lk) : -7878.324951 -> -7878.306949 0 swap done . Last optimization step... . Log(lk) : * -> -7878.295579 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.295579 -> -7878.275029 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.275029 -> -7878.273101 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.273101 -> -7878.272562 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.272562 -> -7878.272395 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.272395 -> -7878.272324 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.272324 -> -7878.272295 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.272295 -> -7878.272282 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.272282 -> -7878.272276 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.272276 -> -7878.272273 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.272273 -> -7878.272272 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7878.272272 -> -7878.272271 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -7878.272271 . Time used 0h0m39s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 38.62user 0.00system 0:39.38elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps