Sequence filename : /auto/dufayard/res/2.4.5/nucleic_M2738_53x1538_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 25743408 . Log(lk) : * -> -15342.751712 . Log(lk) : -15342.751712 -> -15192.790648 6 swaps done . Log(lk) : -15192.790648 -> -15178.261901 3 swaps done . Log(lk) : -15178.261901 -> -15174.709251 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13956.569081 -> -13932.079668 2 swaps done . Log(lk) : -13932.079668 -> -13926.917487 0 swap done . Log(lk) : -13926.917487 -> -13924.953722 0 swap done . Log(lk) : -13924.953722 -> -13924.067567 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13913.439519 -> -13911.835920 0 swap done . Log(lk) : -13911.835920 -> -13911.183042 0 swap done . Log(lk) : -13911.183042 -> -13910.870322 0 swap done . Last optimization step... . Log(lk) : * -> -13910.643290 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.643290 -> -13910.327231 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.327231 -> -13910.267387 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.267387 -> -13910.251093 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.251093 -> -13910.246657 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.246657 -> -13910.245665 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.245665 -> -13910.245383 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.245383 -> -13910.245320 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.245320 -> -13910.245303 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.245303 -> -13910.245299 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.245299 -> -13910.245298 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13910.245298 -> -13910.245297 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -13910.245297 . Time used 0h0m49s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 48.63user 0.00system 0:49.18elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps