Sequence filename : 				 /auto/dufayard/res/2.4.5/nucleic_M2752_106x1292_2006.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. 11 sites are made from completely undetermined states ('X', '-', '?' or 'N')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 29271704

. Log(lk) :               * ->    -8127.072706 
. Log(lk) :    -8127.072706 ->    -8093.158830  11 swaps done 
. Log(lk) :    -8093.158830 ->    -8089.588960   6 swaps done 
. Log(lk) :    -8089.588960 ->    -8086.351193   6 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7881.173218 ->    -7876.971095   6 swaps done 
. Log(lk) :    -7876.971095 ->    -7874.705793   4 swaps done 
. Log(lk) :    -7874.705793 ->    -7873.319002   3 swaps done 
. Log(lk) :    -7873.319002 ->    -7873.088487   2 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7872.084086 ->    -7871.947720   2 swaps done 
. Log(lk) :    -7871.947720 ->    -7871.868254   2 swaps done 
. Log(lk) :    -7871.868254 ->    -7871.799754   0 swap  done
. Log(lk) :    -7871.799754 ->    -7871.724342   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7871.723921 ->    -7871.637999   0 swap  done
. Log(lk) :    -7871.637999 ->    -7871.573535   0 swap  done
. Log(lk) :    -7871.573535 ->    -7871.552620   0 swap  done
. Log(lk) :    -7871.552620 ->    -7871.548128   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -7871.547076 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7871.547076 ->    -7871.546999 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7871.546999 ->    -7871.546993 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7871.546993 ->    -7871.546992 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -7871.546992 


. Time used 0h1m5s

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64.97user 0.00system 1:05.62elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps