Sequence filename : 				 /auto/dufayard/res/2.4.5/nucleic_M2770_86x1628_2006.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 31651672

. Log(lk) :               * ->    -5946.800783 
. Log(lk) :    -5946.800783 ->    -5904.268884  11 swaps done 
. Log(lk) :    -5904.268884 ->    -5890.955250   6 swaps done 
. Log(lk) :    -5890.955250 ->    -5889.950411   3 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5824.353396 ->    -5823.619842   3 swaps done 
. Log(lk) :    -5823.619842 ->    -5823.347266   0 swap  done
. Log(lk) :    -5823.347266 ->    -5823.309698   0 swap  done
. Log(lk) :    -5823.309698 ->    -5823.296831   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5823.291298 ->    -5823.282796   0 swap  done
. Log(lk) :    -5823.282796 ->    -5823.272764   0 swap  done
. Log(lk) :    -5823.272764 ->    -5823.257624   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -5823.215286 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5823.215286 ->    -5823.186352 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5823.186352 ->    -5823.183805 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5823.183805 ->    -5823.183678 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5823.183678 ->    -5823.183673 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5823.183673 ->    -5823.183672 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -5823.183672 


. Time used 0h0m57s

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56.50user 0.00system 0:57.22elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps