Sequence filename : /auto/dufayard/res/2.4.5/nucleic_M2771_52x1896_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 30013968 . Log(lk) : * -> -15723.466200 . Log(lk) : -15723.466200 -> -15575.341057 5 swaps done . Log(lk) : -15575.341057 -> -15560.003714 4 swaps done . Log(lk) : -15560.003714 -> -15558.313116 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14038.867624 -> -14020.691634 3 swaps done . Log(lk) : -14020.691634 -> -14014.901970 0 swap done . Log(lk) : -14014.901970 -> -14012.515352 0 swap done . Log(lk) : -14012.515352 -> -14011.458852 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14005.227749 -> -14004.163612 0 swap done . Log(lk) : -14004.163612 -> -14003.683294 0 swap done . Log(lk) : -14003.683294 -> -14003.457654 0 swap done . Last optimization step... . Log(lk) : * -> -14003.299538 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.299538 -> -14003.158171 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.158171 -> -14003.134847 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.134847 -> -14003.129196 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.129196 -> -14003.127960 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.127960 -> -14003.127695 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.127695 -> -14003.127649 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.127649 -> -14003.127629 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.127629 -> -14003.127624 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.127624 -> -14003.127621 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.127621 -> -14003.127620 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.127620 -> -14003.127619 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14003.127619 -> -14003.127618 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -14003.127617 . Time used 0h0m58s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 56.27user 0.00system 0:58.08elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps