Sequence filename : 				 /auto/dufayard/res/2.4.5/nucleic_M2772_77x900_2006.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. 57 sites are made from completely undetermined states ('X', '-', '?' or 'N')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 28478600

. Log(lk) :               * ->    -7709.024384 
. Log(lk) :    -7709.024384 ->    -7540.393539  13 swaps done 
. Log(lk) :    -7540.393539 ->    -7514.611504   6 swaps done 
. Log(lk) :    -7514.611504 ->    -7510.503317   4 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7213.975236 ->    -7207.404812   3 swaps done 
. Log(lk) :    -7207.404812 ->    -7206.592302   2 swaps done 
. Log(lk) :    -7206.592302 ->    -7204.887195   1 swap  done
. Log(lk) :    -7204.887195 ->    -7202.099489   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7201.230659 ->    -7199.360548   1 swap  done
. Log(lk) :    -7199.360548 ->    -7198.258907   0 swap  done
. Log(lk) :    -7198.258907 ->    -7197.982257   0 swap  done
. Log(lk) :    -7197.982257 ->    -7197.850577   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7197.817253 ->    -7197.565720   1 swap  done
. Log(lk) :    -7197.565720 ->    -7196.692708   0 swap  done
. Log(lk) :    -7196.692708 ->    -7196.563353   0 swap  done
. Log(lk) :    -7196.563353 ->    -7196.535214   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7196.524677 ->    -7196.516648   0 swap  done
. Log(lk) :    -7196.516648 ->    -7196.514294   0 swap  done
. Log(lk) :    -7196.514294 ->    -7196.513555   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -7196.513237 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7196.513237 ->    -7196.513163 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7196.513163 ->    -7196.513157 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7196.513157 ->    -7196.513156 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -7196.513156 


. Time used 0h1m0s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

59.96user 0.00system 1:00.54elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps