Sequence filename : /auto/dufayard/res/2.4.5/nucleic_M2826_60x1398_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 25021152 . Log(lk) : * -> -15915.716855 . Log(lk) : -15915.716855 -> -15736.224852 6 swaps done . Log(lk) : -15736.224852 -> -15709.664536 4 swaps done . Log(lk) : -15709.664536 -> -15699.544186 2 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14399.473459 -> -14385.727182 3 swaps done . Log(lk) : -14385.727182 -> -14376.102338 3 swaps done . Log(lk) : -14376.102338 -> -14371.246592 2 swaps done . Log(lk) : -14371.246592 -> -14370.361569 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14366.635703 -> -14364.361611 1 swap done . Log(lk) : -14364.361611 -> -14366.005097 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14364.361611 -> -14362.637965 1 swap done . Log(lk) : -14362.637965 -> -14360.965545 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14360.958629 -> -14360.266736 1 swap done . Log(lk) : -14360.266736 -> -14360.024450 0 swap done . Log(lk) : -14360.024450 -> -14359.925503 0 swap done . Log(lk) : -14359.925503 -> -14359.873468 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.835501 -> -14359.787891 1 swap done . Log(lk) : -14359.787891 -> -14359.760700 0 swap done . Log(lk) : -14359.760700 -> -14359.744932 0 swap done . Log(lk) : -14359.744932 -> -14359.735743 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.728288 -> -14359.719480 0 swap done . Log(lk) : -14359.719480 -> -14359.714340 0 swap done . Log(lk) : -14359.714340 -> -14359.711316 0 swap done . Last optimization step... . Log(lk) : * -> -14359.708477 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.708477 -> -14359.705060 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.705060 -> -14359.704004 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.704004 -> -14359.703574 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.703574 -> -14359.703425 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.703425 -> -14359.703361 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.703361 -> -14359.703339 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.703339 -> -14359.703331 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.703331 -> -14359.703328 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.703328 -> -14359.703326 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14359.703326 -> -14359.703325 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -14359.703325 . Time used 0h1m24s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 82.68user 0.00system 1:23.99elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps