Sequence filename : 				 /auto/dufayard/res/2.4.5/nucleic_M2902_51x908_2006.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. 1 sites are made from completely undetermined states ('X', '-', '?' or 'N')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 15164424

. Log(lk) :               * ->    -8338.346975 
. Log(lk) :    -8338.346975 ->    -8226.977809   6 swaps done 
. Log(lk) :    -8226.977809 ->    -8195.668393   6 swaps done 
. Log(lk) :    -8195.668393 ->    -8185.930292   5 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7641.439188 ->    -7626.681813   6 swaps done 
. Log(lk) :    -7626.681813 ->    -7610.200294   3 swaps done 
. Log(lk) :    -7610.200294 ->    -7596.669522   3 swaps done 
. Log(lk) :    -7596.669522 ->    -7592.324373   3 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7590.213410 ->    -7588.965095   3 swaps done 
. Log(lk) :    -7588.965095 ->    -7583.948715   2 swaps done 
. Log(lk) :    -7583.948715 ->    -7583.128243   0 swap  done
. Log(lk) :    -7583.128243 ->    -7582.985000   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7582.973830 ->    -7582.926220   0 swap  done
. Log(lk) :    -7582.926220 ->    -7582.909516   0 swap  done
. Log(lk) :    -7582.909516 ->    -7582.903530   0 swap  done
. Log(lk) :    -7582.903530 ->    -7582.901366   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -7582.900293 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7582.900293 ->    -7582.899895 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7582.899895 ->    -7582.899868 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7582.899868 ->    -7582.899864 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7582.899864 ->    -7582.899864 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -7582.899864 


. Time used 0h0m29s

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28.97user 0.00system 0:29.33elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps