Sequence filename : /auto/dufayard/res/2.4.5/nucleic_M2974_56x827_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11798160 . Log(lk) : * -> -6134.606357 . Log(lk) : -6134.606357 -> -6055.297937 7 swaps done . Log(lk) : -6055.297937 -> -6048.342791 4 swaps done . Log(lk) : -6048.342791 -> -6046.379038 3 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5404.689839 -> -5393.269627 4 swaps done . Log(lk) : -5393.269627 -> -5390.169832 2 swaps done . Log(lk) : -5390.169832 -> -5389.269311 2 swaps done . Log(lk) : -5389.269311 -> -5389.010050 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5385.181226 -> -5384.759321 1 swap done . Log(lk) : -5384.759321 -> -5384.577922 1 swap done . Log(lk) : -5384.577922 -> -5384.609994 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5384.577922 -> -5384.361336 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5384.361197 -> -5384.234812 0 swap done . Log(lk) : -5384.234812 -> -5384.198945 0 swap done . Log(lk) : -5384.198945 -> -5384.182922 0 swap done . Log(lk) : -5384.182922 -> -5384.174901 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5384.170568 -> -5384.165211 0 swap done . Log(lk) : -5384.165211 -> -5384.162402 0 swap done . Last optimization step... . Log(lk) : * -> -5384.159982 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5384.159982 -> -5384.158877 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5384.158877 -> -5384.158544 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5384.158544 -> -5384.158449 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5384.158449 -> -5384.158423 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5384.158423 -> -5384.158417 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5384.158417 -> -5384.158415 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5384.158415 -> -5384.158415 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -5384.158415 . Time used 0h0m26s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 26.09user 0.00system 0:26.39elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps