Sequence filename : /auto/dufayard/res/2.4.5/nucleic_M2975_93x982_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 43517400 . Log(lk) : * -> -13584.807996 . Log(lk) : -13584.807996 -> -13316.906309 11 swaps done . Log(lk) : -13316.906309 -> -13278.192523 6 swaps done . Log(lk) : -13278.192523 -> -13266.567019 4 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12344.476894 -> -12327.584410 6 swaps done . Log(lk) : -12327.584410 -> -12322.530966 5 swaps done . Log(lk) : -12322.530966 -> -12319.712856 3 swaps done . Log(lk) : -12319.712856 -> -12317.333364 2 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12315.131598 -> -12313.366029 3 swaps done . Log(lk) : -12313.366029 -> -12310.479403 1 swap done . Log(lk) : -12310.479403 -> -12308.116583 2 swaps done . Log(lk) : -12308.116583 -> -12305.239411 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12305.154524 -> -12302.653009 1 swap done . Log(lk) : -12302.653009 -> -12301.553739 0 swap done . Log(lk) : -12301.553739 -> -12301.359041 0 swap done . Log(lk) : -12301.359041 -> -12301.300878 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12301.292659 -> -12301.231660 1 swap done . Log(lk) : -12301.231660 -> -12300.584913 0 swap done . Log(lk) : -12300.584913 -> -12300.518668 0 swap done . Log(lk) : -12300.518668 -> -12300.503377 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12300.495322 -> -12300.490638 0 swap done . Log(lk) : -12300.490638 -> -12300.489234 0 swap done . Log(lk) : -12300.489234 -> -12300.488771 0 swap done . Last optimization step... . Log(lk) : * -> -12300.488540 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12300.488540 -> -12300.488385 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12300.488385 -> -12300.488338 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12300.488338 -> -12300.488317 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12300.488317 -> -12300.488306 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12300.488306 -> -12300.488300 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12300.488300 -> -12300.488297 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12300.488297 -> -12300.488294 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12300.488294 -> -12300.488293 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12300.488293 -> -12300.488292 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -12300.488291 . Time used 0h2m9s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 128.47user 0.00system 2:09.36elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps