Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1375_23x530_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 21510320 . Log(lk) : * -> -8023.960470 . Log(lk) : -8023.960470 -> -7936.595555 2 swaps done . Log(lk) : -7936.595555 -> -7911.128868 3 swaps done . Log(lk) : -7911.128868 -> -7896.392102 2 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -7794.367778 -> -7791.358370 2 swaps done . Log(lk) : -7791.358370 -> -7790.589040 1 swap done . Log(lk) : -7790.589040 -> -7790.255085 0 swap done . Log(lk) : -7790.255085 -> -7790.099194 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -7790.092470 -> -7790.000669 0 swap done . Log(lk) : -7790.000669 -> -7789.942499 0 swap done . Log(lk) : -7789.942499 -> -7789.903763 0 swap done . Log(lk) : -7789.903763 -> -7789.877109 0 swap done . Last optimization step... . Log(lk) : * -> -7789.846379 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.846379 -> -7789.830744 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.830744 -> -7789.822068 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.822068 -> -7789.816699 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.816699 -> -7789.813483 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.813483 -> -7789.811450 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.811450 -> -7789.810199 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.810199 -> -7789.809402 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.809402 -> -7789.808904 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808904 -> -7789.808586 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808586 -> -7789.808385 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808385 -> -7789.808256 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808256 -> -7789.808174 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808174 -> -7789.808122 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808122 -> -7789.808088 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808088 -> -7789.808066 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808066 -> -7789.808053 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808053 -> -7789.808044 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808044 -> -7789.808038 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808038 -> -7789.808034 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808034 -> -7789.808032 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808032 -> -7789.808030 . Optimisation of the gamma shape parameter... . Log(lk) : -7789.808030 -> -7789.808029 . Optimisation of the gamma shape parameter... . Final Log(lk) : -7789.808029 . Time used 0h2m51s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 169.56user 0.00system 2:51.26elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps