Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1376_36x484_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 36568896 . Log(lk) : * -> -11792.294322 . Log(lk) : -11792.294322 -> -11677.958848 3 swaps done . Log(lk) : -11677.958848 -> -11660.170243 4 swaps done . Log(lk) : -11660.170243 -> -11655.284712 2 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -11534.936869 -> -11532.174487 2 swaps done . Log(lk) : -11532.174487 -> -11531.287108 0 swap done . Log(lk) : -11531.287108 -> -11531.161083 0 swap done . Log(lk) : -11531.161083 -> -11531.128907 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -11531.108663 -> -11531.098515 0 swap done . Log(lk) : -11531.098515 -> -11531.095372 0 swap done . Log(lk) : -11531.095372 -> -11531.094332 0 swap done . Last optimization step... . Log(lk) : * -> -11531.093863 . Optimisation of the gamma shape parameter... . Log(lk) : -11531.093863 -> -11531.093733 . Optimisation of the gamma shape parameter... . Log(lk) : -11531.093733 -> -11531.093723 . Optimisation of the gamma shape parameter... . Log(lk) : -11531.093723 -> -11531.093722 . Optimisation of the gamma shape parameter... . Log(lk) : -11531.093722 -> -11531.093722 . Optimisation of the gamma shape parameter... . Final Log(lk) : -11531.093722 . Time used 0h2m35s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 153.43user 0.00system 2:34.68elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps