Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1379_9x1557_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 14601600 . Log(lk) : * -> -11768.774741 . Log(lk) : -11768.774741 -> -11713.576357 2 swaps done . Log(lk) : -11713.576357 -> -11706.378425 1 swap done . Log(lk) : -11706.378425 -> -11706.491655 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -11706.378425 -> -11637.551153 1 swap done . Log(lk) : -11637.551153 -> -11635.770579 0 swap done . Log(lk) : -11635.770579 -> -11635.413670 0 swap done . Log(lk) : -11635.413670 -> -11635.311699 0 swap done . Log(lk) : -11635.311699 -> -11635.281312 0 swap done . Log(lk) : -11635.281312 -> -11635.272087 0 swap done . Log(lk) : -11635.272087 -> -11635.269252 0 swap done . Last optimization step... . Log(lk) : * -> -11635.268122 . Optimisation of the gamma shape parameter... . Log(lk) : -11635.268122 -> -11635.267881 . Optimisation of the gamma shape parameter... . Log(lk) : -11635.267881 -> -11635.267863 . Optimisation of the gamma shape parameter... . Log(lk) : -11635.267863 -> -11635.267861 . Optimisation of the gamma shape parameter... . Log(lk) : -11635.267861 -> -11635.267861 . Optimisation of the gamma shape parameter... . Final Log(lk) : -11635.267861 . Time used 0h0m52s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 50.71user 0.00system 0:52.33elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps