Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1383_11x1561_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 19343064 . Log(lk) : * -> -13945.709949 . Log(lk) : -13945.709949 -> -13875.506851 0 swap done . Log(lk) : -13875.506851 -> -13871.824200 1 swap done . Log(lk) : -13871.824200 -> -13871.260613 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -13732.395352 -> -13730.589497 0 swap done . Log(lk) : -13730.589497 -> -13730.308380 0 swap done . Log(lk) : -13730.308380 -> -13730.208218 0 swap done . Log(lk) : -13730.208218 -> -13730.170754 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -13730.170272 -> -13730.155613 0 swap done . Last optimization step... . Log(lk) : * -> -13730.147991 . Optimisation of the gamma shape parameter... . Log(lk) : -13730.147991 -> -13730.146482 . Optimisation of the gamma shape parameter... . Log(lk) : -13730.146482 -> -13730.146311 . Optimisation of the gamma shape parameter... . Log(lk) : -13730.146311 -> -13730.146285 . Optimisation of the gamma shape parameter... . Log(lk) : -13730.146285 -> -13730.146282 . Optimisation of the gamma shape parameter... . Log(lk) : -13730.146282 -> -13730.146282 . Optimisation of the gamma shape parameter... . Final Log(lk) : -13730.146282 . Time used 0h1m3s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 62.88user 0.00system 1:03.27elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps