Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1384_11x391_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 5009160 . Log(lk) : * -> -2913.564447 . Log(lk) : -2913.564447 -> -2900.107717 2 swaps done . Log(lk) : -2900.107717 -> -2898.882295 1 swap done . Log(lk) : -2898.882295 -> -2898.797935 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -2883.083940 -> -2882.819807 0 swap done . Log(lk) : -2882.819807 -> -2882.799175 0 swap done . Log(lk) : -2882.799175 -> -2882.794969 0 swap done . Log(lk) : -2882.794969 -> -2882.793946 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -2882.793119 -> -2882.792884 0 swap done . Last optimization step... . Log(lk) : * -> -2882.792811 . Optimisation of the gamma shape parameter... . Log(lk) : -2882.792811 -> -2882.792806 . Optimisation of the gamma shape parameter... . Log(lk) : -2882.792806 -> -2882.792805 . Optimisation of the gamma shape parameter... . Final Log(lk) : -2882.792805 . Time used 0h0m18s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 17.23user 0.00system 0:17.46elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps