Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1385_11x530_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 8014656 . Log(lk) : * -> -5699.968044 . Log(lk) : -5699.968044 -> -5663.759805 1 swap done . Log(lk) : -5663.759805 -> -5659.990542 1 swap done . Log(lk) : -5659.990542 -> -5659.523827 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -5610.430687 -> -5609.938150 0 swap done . Log(lk) : -5609.938150 -> -5609.858012 0 swap done . Log(lk) : -5609.858012 -> -5609.832574 0 swap done . Log(lk) : -5609.832574 -> -5609.823418 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -5609.823236 -> -5609.819887 0 swap done . Last optimization step... . Log(lk) : * -> -5609.818101 . Optimisation of the gamma shape parameter... . Log(lk) : -5609.818101 -> -5609.817711 . Optimisation of the gamma shape parameter... . Log(lk) : -5609.817711 -> -5609.817652 . Optimisation of the gamma shape parameter... . Log(lk) : -5609.817652 -> -5609.817642 . Optimisation of the gamma shape parameter... . Log(lk) : -5609.817642 -> -5609.817640 . Optimisation of the gamma shape parameter... . Log(lk) : -5609.817640 -> -5609.817640 . Optimisation of the gamma shape parameter... . Final Log(lk) : -5609.817640 . Time used 0h0m26s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 26.11user 0.00system 0:26.45elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps