Sequence filename : 				 /auto/dufayard/res/2.4.5/proteic_M1487_52x981_2003.phy
Data type :             			 aa
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 WAG
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 85071896

. Log(lk) :               * ->   -17086.517834 
. Log(lk) :   -17086.517834 ->   -16844.222990   5 swaps done 
. Log(lk) :   -16844.222990 ->   -16779.336990   4 swaps done 
. Log(lk) :   -16779.336990 ->   -16768.010927   2 swaps done 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16305.969701 ->   -16294.675546   3 swaps done 
. Log(lk) :   -16294.675546 ->   -16292.097655   1 swap  done
. Log(lk) :   -16292.097655 ->   -16291.529820   0 swap  done
. Log(lk) :   -16291.529820 ->   -16291.328701   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.326770 ->   -16291.220583   1 swap  done
. Log(lk) :   -16291.220583 ->   -16291.161389   1 swap  done
. Log(lk) :   -16291.161389 ->   -16291.127014   0 swap  done
. Log(lk) :   -16291.127014 ->   -16291.106626   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.094715 ->   -16291.076178   0 swap  done
. Log(lk) :   -16291.076178 ->   -16291.065000   0 swap  done
. Log(lk) :   -16291.065000 ->   -16291.058187   0 swap  done
. Log(lk) :   -16291.058187 ->   -16291.054019   0 swap  done

. Last optimization step...

. Log(lk) :               * ->   -16291.049976 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.049976 ->   -16291.043285 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.043285 ->   -16291.041240 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.041240 ->   -16291.040264 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.040264 ->   -16291.039854 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.039854 ->   -16291.039681 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.039681 ->   -16291.039606 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.039606 ->   -16291.039574 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.039574 ->   -16291.039561 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.039561 ->   -16291.039555 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.039555 ->   -16291.039553 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.039553 ->   -16291.039552 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16291.039552 ->   -16291.039551 

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -16291.039551 

. Time used 0h10m35s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

633.38user 0.00system 10:35.13elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps