Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1504_37x547_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 41180568 . Log(lk) : * -> -12796.277605 . Log(lk) : -12796.277605 -> -12680.497309 3 swaps done . Log(lk) : -12680.497309 -> -12669.503699 0 swap done . Log(lk) : -12669.503699 -> -12667.926342 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -12586.339708 -> -12585.660690 0 swap done . Log(lk) : -12585.660690 -> -12585.576523 0 swap done . Log(lk) : -12585.576523 -> -12585.554764 0 swap done . Log(lk) : -12585.554764 -> -12585.545986 0 swap done . Last optimization step... . Log(lk) : * -> -12585.538857 . Optimisation of the gamma shape parameter... . Log(lk) : -12585.538857 -> -12585.535868 . Optimisation of the gamma shape parameter... . Log(lk) : -12585.535868 -> -12585.535108 . Optimisation of the gamma shape parameter... . Log(lk) : -12585.535108 -> -12585.534811 . Optimisation of the gamma shape parameter... . Log(lk) : -12585.534811 -> -12585.534711 . Optimisation of the gamma shape parameter... . Log(lk) : -12585.534711 -> -12585.534670 . Optimisation of the gamma shape parameter... . Log(lk) : -12585.534670 -> -12585.534656 . Optimisation of the gamma shape parameter... . Log(lk) : -12585.534656 -> -12585.534651 . Optimisation of the gamma shape parameter... . Log(lk) : -12585.534651 -> -12585.534649 . Optimisation of the gamma shape parameter... . Log(lk) : -12585.534649 -> -12585.534648 . Optimisation of the gamma shape parameter... . Final Log(lk) : -12585.534648 . Time used 0h2m52s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 170.99user 0.00system 2:51.60elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps