Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1508_22x431_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 9534304 . Log(lk) : * -> -3243.513379 . Log(lk) : -3243.513379 -> -3224.217705 4 swaps done . Log(lk) : -3224.217705 -> -3221.564128 3 swaps done . Log(lk) : -3221.564128 -> -3221.798888 3 swaps done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -3221.564128 -> -3156.428465 3 swaps done . Log(lk) : -3156.428465 -> -3155.583033 1 swap done . Log(lk) : -3155.583033 -> -3155.290467 0 swap done . Log(lk) : -3155.290467 -> -3155.182597 0 swap done . Log(lk) : -3155.182597 -> -3155.145521 0 swap done . Log(lk) : -3155.145521 -> -3155.131757 0 swap done . Log(lk) : -3155.131757 -> -3155.126293 0 swap done . Log(lk) : -3155.126293 -> -3155.124083 0 swap done . Last optimization step... . Log(lk) : * -> -3155.122771 . Optimisation of the gamma shape parameter... . Log(lk) : -3155.122771 -> -3155.093960 . Optimisation of the gamma shape parameter... . Log(lk) : -3155.093960 -> -3155.092382 . Optimisation of the gamma shape parameter... . Log(lk) : -3155.092382 -> -3155.092083 . Optimisation of the gamma shape parameter... . Log(lk) : -3155.092083 -> -3155.092036 . Optimisation of the gamma shape parameter... . Log(lk) : -3155.092036 -> -3155.092029 . Optimisation of the gamma shape parameter... . Log(lk) : -3155.092029 -> -3155.092028 . Optimisation of the gamma shape parameter... . Log(lk) : -3155.092028 -> -3155.092028 . Optimisation of the gamma shape parameter... . Final Log(lk) : -3155.092028 . Time used 0h0m52s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 51.57user 0.00system 0:51.85elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps