Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1601_36x340_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 30038736 . Log(lk) : * -> -7056.379443 . Log(lk) : -7056.379443 -> -6965.364594 6 swaps done . Log(lk) : -6965.364594 -> -6947.976226 3 swaps done . Log(lk) : -6947.976226 -> -6941.630827 3 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -6930.686216 -> -6926.729813 4 swaps done . Log(lk) : -6926.729813 -> -6924.102818 3 swaps done . Log(lk) : -6924.102818 -> -6922.848763 2 swaps done . Log(lk) : -6922.848763 -> -6922.618889 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -6922.522552 -> -6922.384675 2 swaps done . Log(lk) : -6922.384675 -> -6922.363554 1 swap done . Log(lk) : -6922.363554 -> -6922.290988 1 swap done . Log(lk) : -6922.290988 -> -6922.327338 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -6922.290988 -> -6922.180129 1 swap done . Log(lk) : -6922.180129 -> -6922.107946 0 swap done . Log(lk) : -6922.107946 -> -6922.093621 0 swap done . Log(lk) : -6922.093621 -> -6922.087203 0 swap done . Log(lk) : -6922.087203 -> -6922.083717 0 swap done . Log(lk) : -6922.083717 -> -6922.081740 0 swap done . Log(lk) : -6922.081740 -> -6922.080604 0 swap done . Last optimization step... . Log(lk) : * -> -6922.079603 . Optimisation of the gamma shape parameter... . Log(lk) : -6922.079603 -> -6922.078494 . Optimisation of the gamma shape parameter... . Log(lk) : -6922.078494 -> -6922.078281 . Optimisation of the gamma shape parameter... . Log(lk) : -6922.078281 -> -6922.078200 . Optimisation of the gamma shape parameter... . Log(lk) : -6922.078200 -> -6922.078175 . Optimisation of the gamma shape parameter... . Log(lk) : -6922.078175 -> -6922.078166 . Optimisation of the gamma shape parameter... . Log(lk) : -6922.078166 -> -6922.078163 . Optimisation of the gamma shape parameter... . Log(lk) : -6922.078163 -> -6922.078162 . Optimisation of the gamma shape parameter... . Final Log(lk) : -6922.078162 . Time used 0h4m19s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 253.31user 0.00system 4:19.87elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps