Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1812_34x176_2004.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 15203240 . Log(lk) : * -> -5453.853761 . Log(lk) : -5453.853761 -> -5428.874853 1 swap done . Log(lk) : -5428.874853 -> -5424.828445 2 swaps done . Log(lk) : -5424.828445 -> -5422.770221 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -5421.485670 -> -5421.076056 0 swap done . Log(lk) : -5421.076056 -> -5420.949977 0 swap done . Log(lk) : -5420.949977 -> -5420.903477 0 swap done . Log(lk) : -5420.903477 -> -5420.884813 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -5420.884810 -> -5420.876917 0 swap done . Last optimization step... . Log(lk) : * -> -5420.872055 . Optimisation of the gamma shape parameter... . Log(lk) : -5420.872055 -> -5420.870821 . Optimisation of the gamma shape parameter... . Log(lk) : -5420.870821 -> -5420.870594 . Optimisation of the gamma shape parameter... . Log(lk) : -5420.870594 -> -5420.870540 . Optimisation of the gamma shape parameter... . Log(lk) : -5420.870540 -> -5420.870528 . Optimisation of the gamma shape parameter... . Log(lk) : -5420.870528 -> -5420.870525 . Optimisation of the gamma shape parameter... . Log(lk) : -5420.870525 -> -5420.870525 . Optimisation of the gamma shape parameter... . Final Log(lk) : -5420.870525 . Time used 0h1m7s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 66.45user 0.00system 1:06.80elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps