Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1882_8x705_2004.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 9209824 . Log(lk) : * -> -6237.831976 . Log(lk) : -6237.831976 -> -6210.906385 0 swap done . Log(lk) : -6210.906385 -> -6209.786863 0 swap done . Log(lk) : -6209.786863 -> -6209.549250 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -6199.985790 -> -6197.375640 0 swap done . Log(lk) : -6197.375640 -> -6196.845610 0 swap done . Log(lk) : -6196.845610 -> -6196.406131 1 swap done . Log(lk) : -6196.406131 -> -6194.014915 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -6193.256728 -> -6192.495796 0 swap done . Log(lk) : -6192.495796 -> -6192.316566 0 swap done . Log(lk) : -6192.316566 -> -6192.269139 0 swap done . Log(lk) : -6192.269139 -> -6192.255363 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -6192.094510 -> -6192.038170 0 swap done . Last optimization step... . Log(lk) : * -> -6192.020980 . Optimisation of the gamma shape parameter... . Log(lk) : -6192.020980 -> -6191.998519 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.998519 -> -6191.988742 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.988742 -> -6191.986485 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.986485 -> -6191.985802 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.985802 -> -6191.985605 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.985605 -> -6191.985541 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.985541 -> -6191.985521 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.985521 -> -6191.985515 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.985515 -> -6191.985513 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.985513 -> -6191.985512 . Optimisation of the gamma shape parameter... . Final Log(lk) : -6191.985512 . Time used 0h0m59s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 58.70user 0.00system 0:59.00elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps