Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1989_18x173_2004.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . 7 sites are made from completely undetermined states ('X', '-', '?')... . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 6201624 . Log(lk) : * -> -3230.141268 . Log(lk) : -3230.141268 -> -3204.676039 3 swaps done . Log(lk) : -3204.676039 -> -3201.418431 2 swaps done . Log(lk) : -3201.418431 -> -3200.064821 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -3180.492727 -> -3179.947601 0 swap done . Log(lk) : -3179.947601 -> -3179.909964 0 swap done . Log(lk) : -3179.909964 -> -3179.902824 0 swap done . Log(lk) : -3179.902824 -> -3179.900609 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -3179.898152 -> -3179.897331 0 swap done . Last optimization step... . Log(lk) : * -> -3179.896860 . Optimisation of the gamma shape parameter... . Log(lk) : -3179.896860 -> -3179.896724 . Optimisation of the gamma shape parameter... . Log(lk) : -3179.896724 -> -3179.896691 . Optimisation of the gamma shape parameter... . Log(lk) : -3179.896691 -> -3179.896682 . Optimisation of the gamma shape parameter... . Log(lk) : -3179.896682 -> -3179.896679 . Optimisation of the gamma shape parameter... . Log(lk) : -3179.896679 -> -3179.896678 . Optimisation of the gamma shape parameter... . Final Log(lk) : -3179.896678 . Time used 0h0m28s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 27.48user 0.00system 0:27.88elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps