Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1991_32x129_2004.phy
Data type : aa
Sequence format : interleaved
Number of data sets : 1
Nb of bootstrapped data sets : 0
Model name : WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 4
Gamma distribution parameter : estimated
Starting tree : BIONJ
Optimise tree topology : yes
Optimise branch lengths and rate parameters : yes
. 9 sites are made from completely undetermined states ('X', '-', '?')...
. Compressing sequences...
. Computing pairwise distances...
. Large distance encountered between tax2 and tax1 sequences
. Large distance encountered between tax3 and tax1 sequences
. Large distance encountered between tax4 and tax1 sequences
. Large distance encountered between tax5 and tax1 sequences
. Large distance encountered between tax6 and tax1 sequences
. Large distance encountered between tax7 and tax1 sequences
. Large distance encountered between tax8 and tax1 sequences
. Large distance encountered between tax9 and tax1 sequences
. Large distance encountered between tax10 and tax1 sequences
. Large distance encountered between tax11 and tax1 sequences
. Large distance encountered between tax12 and tax1 sequences
. Large distance encountered between tax13 and tax1 sequences
. Large distance encountered between tax14 and tax1 sequences
. Large distance encountered between tax15 and tax1 sequences
. Large distance encountered between tax16 and tax1 sequences
. Large distance encountered between tax17 and tax1 sequences
. Large distance encountered between tax18 and tax1 sequences
. Large distance encountered between tax19 and tax1 sequences
. Large distance encountered between tax20 and tax1 sequences
. Large distance encountered between tax21 and tax1 sequences
. Large distance encountered between tax22 and tax1 sequences
. Large distance encountered between tax23 and tax1 sequences
. Large distance encountered between tax24 and tax1 sequences
. Large distance encountered between tax25 and tax1 sequences
. Large distance encountered between tax26 and tax1 sequences
. Large distance encountered between tax27 and tax1 sequences
. Large distance encountered between tax28 and tax1 sequences
. Large distance encountered between tax29 and tax1 sequences
. Large distance encountered between tax30 and tax1 sequences
. Large distance encountered between tax31 and tax1 sequences
. Large distance encountered between tax32 and tax1 sequences
. Building BIONJ tree...
. Nbytes = 9319336
. Log(lk) : * -> -2496.764604
. Log(lk) : -2496.764604 -> -2423.793809 5 swaps done
. Log(lk) : -2423.793809 -> -2408.847589 3 swaps done
. Log(lk) : -2408.847589 -> -2400.109655 2 swaps done
. Optimisation of the gamma shape parameter...
. Log(lk) : -2397.890254 -> -2396.216672 1 swap done
. Log(lk) : -2396.216672 -> -2395.957803 0 swap done
. Log(lk) : -2395.957803 -> -2395.851830 0 swap done
. Log(lk) : -2395.851830 -> -2395.800484 0 swap done
. Optimisation of the gamma shape parameter...
. Log(lk) : -2395.798453 -> -2395.770840 0 swap done
. Log(lk) : -2395.770840 -> -2395.755417 0 swap done
. Log(lk) : -2395.755417 -> -2395.746487 0 swap done
. Last optimization step...
. Log(lk) : * -> -2395.737604
. Optimisation of the gamma shape parameter...
. Log(lk) : -2395.737604 -> -2395.733402
. Optimisation of the gamma shape parameter...
. Log(lk) : -2395.733402 -> -2395.732287
. Optimisation of the gamma shape parameter...
. Log(lk) : -2395.732287 -> -2395.731982
. Optimisation of the gamma shape parameter...
. Log(lk) : -2395.731982 -> -2395.731892
. Optimisation of the gamma shape parameter...
. Log(lk) : -2395.731892 -> -2395.731868
. Optimisation of the gamma shape parameter...
. Log(lk) : -2395.731868 -> -2395.731861
. Optimisation of the gamma shape parameter...
. Log(lk) : -2395.731861 -> -2395.731859
. Optimisation of the gamma shape parameter...
. Log(lk) : -2395.731859 -> -2395.731858
. Optimisation of the gamma shape parameter...
. Final Log(lk) : -2395.731858
. Time used 0h1m1s
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60.16user 0.00system 1:00.58elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps