Sequence filename : 				 /auto/dufayard/res/2.4.5/proteic_M1991_32x129_2004.phy
Data type :             			 aa
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 WAG
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. 9 sites are made from completely undetermined states ('X', '-', '?')...

. Compressing sequences...

. Computing pairwise distances...

. Large distance encountered between tax2 and tax1 sequences

. Large distance encountered between tax3 and tax1 sequences

. Large distance encountered between tax4 and tax1 sequences

. Large distance encountered between tax5 and tax1 sequences

. Large distance encountered between tax6 and tax1 sequences

. Large distance encountered between tax7 and tax1 sequences

. Large distance encountered between tax8 and tax1 sequences

. Large distance encountered between tax9 and tax1 sequences

. Large distance encountered between tax10 and tax1 sequences

. Large distance encountered between tax11 and tax1 sequences

. Large distance encountered between tax12 and tax1 sequences

. Large distance encountered between tax13 and tax1 sequences

. Large distance encountered between tax14 and tax1 sequences

. Large distance encountered between tax15 and tax1 sequences

. Large distance encountered between tax16 and tax1 sequences

. Large distance encountered between tax17 and tax1 sequences

. Large distance encountered between tax18 and tax1 sequences

. Large distance encountered between tax19 and tax1 sequences

. Large distance encountered between tax20 and tax1 sequences

. Large distance encountered between tax21 and tax1 sequences

. Large distance encountered between tax22 and tax1 sequences

. Large distance encountered between tax23 and tax1 sequences

. Large distance encountered between tax24 and tax1 sequences

. Large distance encountered between tax25 and tax1 sequences

. Large distance encountered between tax26 and tax1 sequences

. Large distance encountered between tax27 and tax1 sequences

. Large distance encountered between tax28 and tax1 sequences

. Large distance encountered between tax29 and tax1 sequences

. Large distance encountered between tax30 and tax1 sequences

. Large distance encountered between tax31 and tax1 sequences

. Large distance encountered between tax32 and tax1 sequences

. Building BIONJ tree...

. Nbytes = 9319336

. Log(lk) :               * ->    -2496.764604 
. Log(lk) :    -2496.764604 ->    -2423.793809   5 swaps done 
. Log(lk) :    -2423.793809 ->    -2408.847589   3 swaps done 
. Log(lk) :    -2408.847589 ->    -2400.109655   2 swaps done 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2397.890254 ->    -2396.216672   1 swap  done
. Log(lk) :    -2396.216672 ->    -2395.957803   0 swap  done
. Log(lk) :    -2395.957803 ->    -2395.851830   0 swap  done
. Log(lk) :    -2395.851830 ->    -2395.800484   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2395.798453 ->    -2395.770840   0 swap  done
. Log(lk) :    -2395.770840 ->    -2395.755417   0 swap  done
. Log(lk) :    -2395.755417 ->    -2395.746487   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -2395.737604 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2395.737604 ->    -2395.733402 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2395.733402 ->    -2395.732287 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2395.732287 ->    -2395.731982 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2395.731982 ->    -2395.731892 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2395.731892 ->    -2395.731868 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2395.731868 ->    -2395.731861 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2395.731861 ->    -2395.731859 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2395.731859 ->    -2395.731858 

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -2395.731858 

. Time used 0h1m1s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

60.16user 0.00system 1:00.58elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps