Sequence filename : /auto/dufayard/res/2.4.5/proteic_M1993_28x93_2004.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 5660824 . Log(lk) : * -> -2058.334984 . Log(lk) : -2058.334984 -> -2036.577733 3 swaps done . Log(lk) : -2036.577733 -> -2027.265940 3 swaps done . Log(lk) : -2027.265940 -> -2024.449459 3 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -2010.712908 -> -2007.420460 2 swaps done . Log(lk) : -2007.420460 -> -2006.769193 1 swap done . Log(lk) : -2006.769193 -> -2006.641648 0 swap done . Log(lk) : -2006.641648 -> -2006.582745 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -2006.580838 -> -2006.543817 0 swap done . Log(lk) : -2006.543817 -> -2006.519463 0 swap done . Log(lk) : -2006.519463 -> -2006.503068 0 swap done . Log(lk) : -2006.503068 -> -2006.492035 0 swap done . Last optimization step... . Log(lk) : * -> -2006.480842 . Optimisation of the gamma shape parameter... . Log(lk) : -2006.480842 -> -2006.473169 . Optimisation of the gamma shape parameter... . Log(lk) : -2006.473169 -> -2006.470568 . Optimisation of the gamma shape parameter... . Log(lk) : -2006.470568 -> -2006.469699 . Optimisation of the gamma shape parameter... . Log(lk) : -2006.469699 -> -2006.469409 . Optimisation of the gamma shape parameter... . Log(lk) : -2006.469409 -> -2006.469313 . Optimisation of the gamma shape parameter... . Log(lk) : -2006.469313 -> -2006.469281 . Optimisation of the gamma shape parameter... . Log(lk) : -2006.469281 -> -2006.469270 . Optimisation of the gamma shape parameter... . Log(lk) : -2006.469270 -> -2006.469267 . Optimisation of the gamma shape parameter... . Log(lk) : -2006.469267 -> -2006.469265 . Optimisation of the gamma shape parameter... . Log(lk) : -2006.469265 -> -2006.469265 . Optimisation of the gamma shape parameter... . Final Log(lk) : -2006.469265 . Time used 0h0m45s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 43.57user 0.00system 0:44.53elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps