Sequence filename : 				 /auto/dufayard/res/2.4.5/proteic_M2302_24x365_2005.phy
Data type :             			 aa
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 WAG
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. 19 sites are made from completely undetermined states ('X', '-', '?')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 15879240

. Log(lk) :               * ->    -4220.487710 
. Log(lk) :    -4220.487710 ->    -4209.412911   3 swaps done 
. Log(lk) :    -4209.412911 ->    -4207.197676   1 swap  done
. Log(lk) :    -4207.197676 ->    -4206.921969   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4204.733971 ->    -4204.575050   0 swap  done
. Log(lk) :    -4204.575050 ->    -4204.542260   0 swap  done
. Log(lk) :    -4204.542260 ->    -4204.533570   0 swap  done
. Log(lk) :    -4204.533570 ->    -4204.531272   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4204.528873 ->    -4204.528097   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -4204.527830 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4204.527830 ->    -4204.527795 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4204.527795 ->    -4204.527794 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -4204.527794 ->    -4204.527794 

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -4204.527794 

. Time used 0h1m7s

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66.61user 0.00system 1:06.96elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps