Sequence filename : 				 /auto/dufayard/res/2.4.5/proteic_M2304_31x429_2005.phy
Data type :             			 aa
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 WAG
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. 35 sites are made from completely undetermined states ('X', '-', '?')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 24329240

. Log(lk) :               * ->    -5536.906832 
. Log(lk) :    -5536.906832 ->    -5521.326311   5 swaps done 
. Log(lk) :    -5521.326311 ->    -5519.426632   1 swap  done
. Log(lk) :    -5519.426632 ->    -5519.065193   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5506.718253 ->    -5506.167091   0 swap  done
. Log(lk) :    -5506.167091 ->    -5506.089872   0 swap  done
. Log(lk) :    -5506.089872 ->    -5506.067309   0 swap  done
. Log(lk) :    -5506.067309 ->    -5506.059293   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5506.049164 ->    -5506.045823   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -5506.044207 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5506.044207 ->    -5506.043920 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5506.043920 ->    -5506.043881 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5506.043881 ->    -5506.043876 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5506.043876 ->    -5506.043876 

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -5506.043876 

. Time used 0h1m45s

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105.11user 0.00system 1:45.59elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps