Sequence filename : /auto/dufayard/res/2.4.5/proteic_M2345_7x232_2005.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 2156440 . Log(lk) : * -> -1586.448152 . Log(lk) : -1586.448152 -> -1584.403406 0 swap done . Log(lk) : -1584.403406 -> -1584.289368 0 swap done . Log(lk) : -1584.289368 -> -1584.274200 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -1583.508683 -> -1583.463964 0 swap done . Log(lk) : -1583.463964 -> -1583.460081 0 swap done . Log(lk) : -1583.460081 -> -1583.459510 0 swap done . Last optimization step... . Log(lk) : * -> -1583.459403 . Optimisation of the gamma shape parameter... . Log(lk) : -1583.459403 -> -1583.457752 . Optimisation of the gamma shape parameter... . Log(lk) : -1583.457752 -> -1583.457676 . Optimisation of the gamma shape parameter... . Log(lk) : -1583.457676 -> -1583.457674 . Optimisation of the gamma shape parameter... . Log(lk) : -1583.457674 -> -1583.457674 . Optimisation of the gamma shape parameter... . Final Log(lk) : -1583.457674 . Time used 0h0m8s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 7.04user 0.00system 0:07.43elapsed 94%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps