Sequence filename : /auto/dufayard/res/2.4.5/proteic_M2382_28x162_2005.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 9243624 . Log(lk) : * -> -2861.439385 . Log(lk) : -2861.439385 -> -2809.696577 4 swaps done . Log(lk) : -2809.696577 -> -2804.395389 5 swaps done . Log(lk) : -2804.395389 -> -2801.327535 4 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -2719.525559 -> -2716.716483 4 swaps done . Log(lk) : -2716.716483 -> -2716.073792 4 swaps done . Log(lk) : -2716.073792 -> -2713.877491 3 swaps done . Log(lk) : -2713.877491 -> -2712.355744 3 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -2712.318634 -> -2710.904749 1 swap done . Log(lk) : -2710.904749 -> -2710.436346 0 swap done . Log(lk) : -2710.436346 -> -2710.355004 0 swap done . Log(lk) : -2710.355004 -> -2710.333302 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -2710.333034 -> -2710.327108 0 swap done . Log(lk) : -2710.327108 -> -2710.325452 0 swap done . Log(lk) : -2710.325452 -> -2710.324974 0 swap done . Last optimization step... . Log(lk) : * -> -2710.324788 . Optimisation of the gamma shape parameter... . Log(lk) : -2710.324788 -> -2710.324764 . Optimisation of the gamma shape parameter... . Log(lk) : -2710.324764 -> -2710.324762 . Optimisation of the gamma shape parameter... . Log(lk) : -2710.324762 -> -2710.324762 . Optimisation of the gamma shape parameter... . Final Log(lk) : -2710.324762 . Time used 0h1m0s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 58.61user 0.00system 0:59.80elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps