Sequence filename : 				 /auto/dufayard/res/2.4.5/proteic_M2477_39x888_2005.phy
Data type :             			 aa
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 WAG
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 64693200

. Log(lk) :               * ->   -21820.928375 
. Log(lk) :   -21820.928375 ->   -21569.174257   1 swap  done
. Log(lk) :   -21569.174257 ->   -21545.995770   1 swap  done
. Log(lk) :   -21545.995770 ->   -21539.700031   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21178.279234 ->   -21169.565861   0 swap  done
. Log(lk) :   -21169.565861 ->   -21166.600857   0 swap  done
. Log(lk) :   -21166.600857 ->   -21165.126548   0 swap  done
. Log(lk) :   -21165.126548 ->   -21164.361105   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21164.344848 ->   -21163.930210   0 swap  done
. Log(lk) :   -21163.930210 ->   -21163.708103   0 swap  done

. Last optimization step...

. Log(lk) :               * ->   -21163.528126 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.528126 ->   -21163.457668 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.457668 ->   -21163.440625 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.440625 ->   -21163.437080 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.437080 ->   -21163.436345 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.436345 ->   -21163.436190 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.436190 ->   -21163.436158 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.436158 ->   -21163.436152 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.436152 ->   -21163.436150 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -21163.436150 ->   -21163.436150 

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -21163.436150 

. Time used 0h5m8s

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299.98user 0.00system 5:07.83elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps