Sequence filename : /auto/dufayard/res/2.4.5/proteic_M2479_30x627_2005.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 40150344 . Log(lk) : * -> -18370.156682 . Log(lk) : -18370.156682 -> -18219.381223 3 swaps done . Log(lk) : -18219.381223 -> -18207.257878 3 swaps done . Log(lk) : -18207.257878 -> -18203.757746 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -18066.173202 -> -18064.137174 1 swap done . Log(lk) : -18064.137174 -> -18063.895988 1 swap done . Log(lk) : -18063.895988 -> -18063.850436 1 swap done . Log(lk) : -18063.850436 -> -18063.851829 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -18063.850436 -> -18063.107214 1 swap done . Log(lk) : -18063.107214 -> -18062.869061 0 swap done . Log(lk) : -18062.869061 -> -18062.847686 0 swap done . Log(lk) : -18062.847686 -> -18062.840418 0 swap done . Log(lk) : -18062.840418 -> -18062.837089 0 swap done . Log(lk) : -18062.837089 -> -18062.835395 0 swap done . Log(lk) : -18062.835395 -> -18062.834493 0 swap done . Last optimization step... . Log(lk) : * -> -18062.833751 . Optimisation of the gamma shape parameter... . Log(lk) : -18062.833751 -> -18062.829507 . Optimisation of the gamma shape parameter... . Log(lk) : -18062.829507 -> -18062.828789 . Optimisation of the gamma shape parameter... . Log(lk) : -18062.828789 -> -18062.828510 . Optimisation of the gamma shape parameter... . Log(lk) : -18062.828510 -> -18062.828421 . Optimisation of the gamma shape parameter... . Log(lk) : -18062.828421 -> -18062.828394 . Optimisation of the gamma shape parameter... . Log(lk) : -18062.828394 -> -18062.828386 . Optimisation of the gamma shape parameter... . Log(lk) : -18062.828386 -> -18062.828383 . Optimisation of the gamma shape parameter... . Log(lk) : -18062.828383 -> -18062.828383 . Optimisation of the gamma shape parameter... . Final Log(lk) : -18062.828383 . Time used 0h3m40s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 218.98user 0.00system 3:39.78elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps