Sequence filename : /auto/dufayard/res/2.4.5/proteic_M2512_14x717_2006.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Large distance encountered between tax2 and tax1 sequences . Large distance encountered between tax3 and tax1 sequences . Large distance encountered between tax4 and tax1 sequences . Large distance encountered between tax5 and tax1 sequences . Large distance encountered between tax6 and tax1 sequences . Large distance encountered between tax7 and tax1 sequences . Large distance encountered between tax8 and tax1 sequences . Large distance encountered between tax9 and tax1 sequences . Large distance encountered between tax11 and tax1 sequences . Large distance encountered between tax12 and tax1 sequences . Large distance encountered between tax13 and tax1 sequences . Large distance encountered between tax14 and tax1 sequences . Large distance encountered between tax3 and tax2 sequences . Large distance encountered between tax4 and tax2 sequences . Large distance encountered between tax5 and tax2 sequences . Large distance encountered between tax6 and tax2 sequences . Large distance encountered between tax7 and tax2 sequences . Large distance encountered between tax8 and tax2 sequences . Large distance encountered between tax9 and tax2 sequences . Large distance encountered between tax10 and tax2 sequences . Large distance encountered between tax11 and tax2 sequences . Large distance encountered between tax12 and tax2 sequences . Large distance encountered between tax13 and tax2 sequences . Large distance encountered between tax14 and tax2 sequences . Large distance encountered between tax6 and tax3 sequences . Large distance encountered between tax7 and tax3 sequences . Large distance encountered between tax8 and tax3 sequences . Large distance encountered between tax9 and tax3 sequences . Large distance encountered between tax10 and tax3 sequences . Large distance encountered between tax12 and tax3 sequences . Large distance encountered between tax14 and tax3 sequences . Large distance encountered between tax6 and tax4 sequences . Large distance encountered between tax7 and tax4 sequences . Large distance encountered between tax8 and tax4 sequences . Large distance encountered between tax9 and tax4 sequences . Large distance encountered between tax10 and tax4 sequences . Large distance encountered between tax12 and tax4 sequences . Large distance encountered between tax14 and tax4 sequences . Large distance encountered between tax6 and tax5 sequences . Large distance encountered between tax7 and tax5 sequences . Large distance encountered between tax9 and tax5 sequences . Large distance encountered between tax10 and tax5 sequences . Large distance encountered between tax14 and tax5 sequences . Large distance encountered between tax7 and tax6 sequences . Large distance encountered between tax8 and tax6 sequences . Large distance encountered between tax9 and tax6 sequences . Large distance encountered between tax10 and tax6 sequences . Large distance encountered between tax11 and tax6 sequences . Large distance encountered between tax12 and tax6 sequences . Large distance encountered between tax13 and tax6 sequences . Large distance encountered between tax14 and tax6 sequences . Large distance encountered between tax8 and tax7 sequences . Large distance encountered between tax9 and tax7 sequences . Large distance encountered between tax10 and tax7 sequences . Large distance encountered between tax11 and tax7 sequences . Large distance encountered between tax12 and tax7 sequences . Large distance encountered between tax13 and tax7 sequences . Large distance encountered between tax14 and tax7 sequences . Large distance encountered between tax9 and tax8 sequences . Large distance encountered between tax10 and tax8 sequences . Large distance encountered between tax13 and tax8 sequences . Large distance encountered between tax10 and tax9 sequences . Large distance encountered between tax11 and tax9 sequences . Large distance encountered between tax12 and tax9 sequences . Large distance encountered between tax13 and tax9 sequences . Large distance encountered between tax14 and tax9 sequences . Large distance encountered between tax11 and tax10 sequences . Large distance encountered between tax12 and tax10 sequences . Large distance encountered between tax13 and tax10 sequences . Large distance encountered between tax14 and tax10 sequences . Large distance encountered between tax14 and tax11 sequences . Large distance encountered between tax13 and tax12 sequences . Large distance encountered between tax14 and tax13 sequences . Building BIONJ tree... . Nbytes = 23761400 . Log(lk) : * -> -20898.553006 . Log(lk) : -20898.553006 -> -20320.405547 3 swaps done . Log(lk) : -20320.405547 -> -20212.559172 3 swaps done . Log(lk) : -20212.559172 -> -20195.232392 2 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -20192.465730 -> -20181.842446 0 swap done . Log(lk) : -20181.842446 -> -20175.850037 0 swap done . Log(lk) : -20175.850037 -> -20162.090969 0 swap done . Log(lk) : -20162.090969 -> -20142.427646 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -20127.895946 -> -20102.391521 0 swap done . Log(lk) : -20102.391521 -> -20101.037762 0 swap done . Log(lk) : -20101.037762 -> -20100.575069 0 swap done . Log(lk) : -20100.575069 -> -20100.268971 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -20100.267919 -> -20100.101968 0 swap done . Log(lk) : -20100.101968 -> -20099.990384 0 swap done . Last optimization step... . Log(lk) : * -> -20099.850350 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.850350 -> -20099.789559 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.789559 -> -20099.757308 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.757308 -> -20099.731053 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.731053 -> -20099.712608 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.712608 -> -20099.697913 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.697913 -> -20099.687260 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.687260 -> -20099.678988 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.678988 -> -20099.672912 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.672912 -> -20099.668278 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.668278 -> -20099.664854 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.664854 -> -20099.662270 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.662270 -> -20099.660353 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.660353 -> -20099.658916 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.658916 -> -20099.657847 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.657847 -> -20099.657047 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.657047 -> -20099.656452 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.656452 -> -20099.656009 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.656009 -> -20099.655677 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.655677 -> -20099.655431 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.655431 -> -20099.655247 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.655247 -> -20099.655110 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.655110 -> -20099.655007 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.655007 -> -20099.654931 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654931 -> -20099.654874 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654874 -> -20099.654831 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654831 -> -20099.654799 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654799 -> -20099.654776 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654776 -> -20099.654758 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654758 -> -20099.654745 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654745 -> -20099.654735 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654735 -> -20099.654728 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654728 -> -20099.654722 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654722 -> -20099.654718 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654718 -> -20099.654715 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654715 -> -20099.654713 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654713 -> -20099.654711 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654711 -> -20099.654710 . Optimisation of the gamma shape parameter... . Log(lk) : -20099.654710 -> -20099.654709 . Optimisation of the gamma shape parameter... . Final Log(lk) : -20099.654709 . Time used 0h4m26s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 262.80user 0.00system 4:25.54elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps