Sequence filename : /auto/dufayard/res/2.4.5/proteic_M2558_27x1060_2005.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 51438192 . Log(lk) : * -> -37803.532076 . Log(lk) : -37803.532076 -> -37608.309023 6 swaps done . Log(lk) : -37608.309023 -> -37578.022042 3 swaps done . Log(lk) : -37578.022042 -> -37563.135630 3 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -37285.223108 -> -37245.568844 1 swap done . Log(lk) : -37245.568844 -> -37226.652735 1 swap done . Log(lk) : -37226.652735 -> -37216.103386 1 swap done . Log(lk) : -37216.103386 -> -37211.666986 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -37208.173207 -> -37203.475772 0 swap done . Log(lk) : -37203.475772 -> -37200.781451 0 swap done . Log(lk) : -37200.781451 -> -37199.292765 0 swap done . Log(lk) : -37199.292765 -> -37198.418761 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -37196.475617 -> -37194.712635 0 swap done . Last optimization step... . Log(lk) : * -> -37193.174804 . Optimisation of the gamma shape parameter... . Log(lk) : -37193.174804 -> -37191.544918 . Optimisation of the gamma shape parameter... . Log(lk) : -37191.544918 -> -37190.325188 . Optimisation of the gamma shape parameter... . Log(lk) : -37190.325188 -> -37189.605417 . Optimisation of the gamma shape parameter... . Log(lk) : -37189.605417 -> -37189.132543 . Optimisation of the gamma shape parameter... . Log(lk) : -37189.132543 -> -37188.871742 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.871742 -> -37188.700922 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.700922 -> -37188.606224 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.606224 -> -37188.544215 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.544215 -> -37188.509578 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.509578 -> -37188.486895 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.486895 -> -37188.474169 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.474169 -> -37188.465830 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.465830 -> -37188.461137 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.461137 -> -37188.458057 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.458057 -> -37188.456320 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.456320 -> -37188.455180 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.455180 -> -37188.454536 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.454536 -> -37188.454112 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.454112 -> -37188.453872 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453872 -> -37188.453714 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453714 -> -37188.453625 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453625 -> -37188.453566 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453566 -> -37188.453533 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453533 -> -37188.453511 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453511 -> -37188.453498 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453498 -> -37188.453490 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453490 -> -37188.453485 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453485 -> -37188.453482 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453482 -> -37188.453480 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453480 -> -37188.453479 . Optimisation of the gamma shape parameter... . Log(lk) : -37188.453479 -> -37188.453479 . Optimisation of the gamma shape parameter... . Final Log(lk) : -37188.453479 . Time used 0h8m24s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 502.13user 0.00system 8:23.41elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps