Sequence filename : /auto/dufayard/res/2.4.5/proteic_M2624_139x348_2006.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 129014600 . Log(lk) : * -> -13955.366996 . Log(lk) : -13955.366996 -> -13638.939553 20 swaps done . Log(lk) : -13638.939553 -> -13527.530408 16 swaps done . Log(lk) : -13527.530408 -> -13489.846513 14 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -13376.473607 -> -13344.507466 9 swaps done . Log(lk) : -13344.507466 -> -13330.349249 7 swaps done . Log(lk) : -13330.349249 -> -13326.875895 6 swaps done . Log(lk) : -13326.875895 -> -13324.604936 5 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -13324.575491 -> -13323.549134 4 swaps done . Log(lk) : -13323.549134 -> -13322.833406 4 swaps done . Log(lk) : -13322.833406 -> -13322.343556 4 swaps done . Log(lk) : -13322.343556 -> -13322.056903 4 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -13322.056729 -> -13321.761193 4 swaps done . Log(lk) : -13321.761193 -> -13321.637721 4 swaps done . Log(lk) : -13321.637721 -> -13321.375236 4 swaps done . Log(lk) : -13321.375236 -> -13321.328314 4 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -13321.328313 -> -13321.072138 4 swaps done . Log(lk) : -13321.072138 -> -13321.076184 4 swaps done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -13321.072138 -> -13319.946315 4 swaps done . Log(lk) : -13319.946315 -> -13318.754509 3 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -13318.754405 -> -13317.228363 3 swaps done . Log(lk) : -13317.228363 -> -13309.222460 2 swaps done . Log(lk) : -13309.222460 -> -13270.541458 5 swaps done . Log(lk) : -13270.541458 -> -13256.095430 5 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -13256.095359 -> -13252.046400 2 swaps done . Log(lk) : -13252.046400 -> -13250.776957 3 swaps done . Log(lk) : -13250.776957 -> -13245.151542 2 swaps done . Log(lk) : -13245.151542 -> -13243.065019 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -13243.065011 -> -13242.637460 0 swap done . Log(lk) : -13242.637460 -> -13242.331479 1 swap done . Log(lk) : -13242.331479 -> -13241.515972 2 swaps done . Log(lk) : -13241.515972 -> -13241.254366 2 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -13241.254297 -> -13240.532664 3 swaps done . Log(lk) : -13240.532664 -> -13239.851686 3 swaps done . Log(lk) : -13239.851686 -> -13239.642600 1 swap done . Log(lk) : -13239.642600 -> -13239.414078 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -13239.414071 -> -13239.144528 0 swap done . Log(lk) : -13239.144528 -> -13238.965542 0 swap done . Log(lk) : -13238.965542 -> -13238.853419 0 swap done . Log(lk) : -13238.853419 -> -13238.760109 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -13238.760108 -> -13238.685569 0 swap done . Log(lk) : -13238.685569 -> -13238.637214 1 swap done . Log(lk) : -13238.637214 -> -13238.610773 0 swap done . Log(lk) : -13238.610773 -> -13238.591468 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -13238.591465 -> -13238.570051 1 swap done . Log(lk) : -13238.570051 -> -13238.543183 0 swap done . Log(lk) : -13238.543183 -> -13238.531053 0 swap done . Log(lk) : -13238.531053 -> -13238.521623 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -13238.521623 -> -13238.513701 0 swap done . Log(lk) : -13238.513701 -> -13238.506857 0 swap done . Log(lk) : -13238.506857 -> -13238.500888 0 swap done . Log(lk) : -13238.500888 -> -13238.495629 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -13238.495629 -> -13238.490963 0 swap done . Log(lk) : -13238.490963 -> -13238.486799 0 swap done . Last optimization step... . Log(lk) : * -> -13238.480559 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.480559 -> -13238.473038 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.473038 -> -13238.467131 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.467131 -> -13238.462528 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.462528 -> -13238.458953 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.458953 -> -13238.456189 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.456189 -> -13238.454052 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.454052 -> -13238.452414 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.452414 -> -13238.451160 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.451160 -> -13238.450210 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.450210 -> -13238.449490 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.449490 -> -13238.448948 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.448948 -> -13238.448540 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.448540 -> -13238.448234 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.448234 -> -13238.448004 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.448004 -> -13238.447832 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447832 -> -13238.447702 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447702 -> -13238.447604 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447604 -> -13238.447530 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447530 -> -13238.447472 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447472 -> -13238.447428 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447428 -> -13238.447393 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447393 -> -13238.447365 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447365 -> -13238.447343 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447343 -> -13238.447323 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447323 -> -13238.447307 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447307 -> -13238.447293 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447293 -> -13238.447280 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447280 -> -13238.447268 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447268 -> -13238.447257 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447257 -> -13238.447246 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447246 -> -13238.447236 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447236 -> -13238.447226 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447226 -> -13238.447216 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447216 -> -13238.447207 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447207 -> -13238.447197 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447197 -> -13238.447188 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447188 -> -13238.447178 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447178 -> -13238.447169 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447169 -> -13238.447159 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447159 -> -13238.447150 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447150 -> -13238.447140 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447140 -> -13238.447131 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447131 -> -13238.447121 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447121 -> -13238.447112 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447112 -> -13238.447102 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447102 -> -13238.447093 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447093 -> -13238.447083 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447083 -> -13238.447073 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447073 -> -13238.447064 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447064 -> -13238.447054 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447054 -> -13238.447044 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447044 -> -13238.447034 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447034 -> -13238.447025 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447025 -> -13238.447015 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447015 -> -13238.447005 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.447005 -> -13238.446995 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446995 -> -13238.446985 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446985 -> -13238.446975 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446975 -> -13238.446965 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446965 -> -13238.446955 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446955 -> -13238.446945 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446945 -> -13238.446935 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446935 -> -13238.446924 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446924 -> -13238.446914 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446914 -> -13238.446904 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446904 -> -13238.446894 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446894 -> -13238.446883 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446883 -> -13238.446873 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446873 -> -13238.446863 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446863 -> -13238.446852 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446852 -> -13238.446842 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446842 -> -13238.446831 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446831 -> -13238.446821 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446821 -> -13238.446810 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446810 -> -13238.446800 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446800 -> -13238.446789 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446789 -> -13238.446778 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446778 -> -13238.446768 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446768 -> -13238.446757 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446757 -> -13238.446746 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446746 -> -13238.446735 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446735 -> -13238.446725 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446725 -> -13238.446714 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446714 -> -13238.446703 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446703 -> -13238.446692 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446692 -> -13238.446681 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446681 -> -13238.446670 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446670 -> -13238.446659 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446659 -> -13238.446648 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446648 -> -13238.446636 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446636 -> -13238.446625 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446625 -> -13238.446614 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446614 -> -13238.446603 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446603 -> -13238.446591 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446591 -> -13238.446583 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446583 -> -13238.446581 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446581 -> -13238.446580 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446580 -> -13238.446578 . Optimisation of the gamma shape parameter... . Log(lk) : -13238.446578 -> -13238.446576 . Optimisation of the gamma shape parameter... . Final Log(lk) : -13238.446576 . Time used 1h24m3s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 5035.07user 0.00system 1:24:04elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps