.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2623_139x1044_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 100 . Compute approximate likelihood ratio test : no . Model name : HKY85 . Ts/tv ratio : estimated . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : 0.500000 . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 959 patterns found. (out of a total of 1044 sites) . 202 sites without polymorphism (19.35%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 71Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -47820.1920] [Ts/ts ratio ][ 2.962922] . ( 2 sec) [ -47819.5036] [11992] [depth= 1] . ( 2 sec) [ -47817.2008] [11992] [depth= 1] . ( 2 sec) [ -47817.1700] [11992] [depth= 1] . ( 4 sec) [ -47815.0495] [11999] [depth= 1] . ( 4 sec) [ -47812.5414] [11992] [depth= 1] . ( 5 sec) [ -47810.9697] [11995] [depth= 1] . ( 5 sec) [ -47808.8989] [11996] [depth= 1] . ( 7 sec) [ -47727.8587] [12004] [depth= 1] . ( 7 sec) [ -47706.9678] [12001] [depth= 1] . ( 7 sec) [ -47706.3422] [12000] [depth= 1] . ( 8 sec) [ -47699.6413] [12001] [depth= 1] . ( 9 sec) [ -47691.6623] [12006] [depth= 1] . ( 10 sec) [ -47681.6313] [12000] [depth= 11] . ( 11 sec) [ -47671.6289] [11986] [depth= 12] . ( 12 sec) [ -47668.2704] [11981] [depth= 1] . ( 13 sec) [ -47652.7427] [11975] [depth= 1] . ( 14 sec) [ -47604.0710] [11959] [depth= 7] . ( 14 sec) [ -47537.1680] [11956] [depth= 2] . ( 15 sec) [ -47537.1507] [11954] [depth= 1] . ( 16 sec) [ -47536.7481] [11954] [depth= 1] . ( 16 sec) [ -47523.7333] [11953] [depth= 2] . ( 17 sec) [ -47522.2411] [11947] [depth= 2] . ( 17 sec) [ -47515.9402] [11934] [depth= 1] . ( 18 sec) [ -47513.0852] [11947] [depth= 1] . ( 18 sec) [ -47499.0001] [11934] [depth= 1] . ( 19 sec) [ -47498.9515] [11934] [depth= 2] . ( 20 sec) [ -47493.3513] [11934] [depth= 2] . ( 20 sec) [ -47483.1860] [11930] [depth= 2] . ( 20 sec) [ -47480.3080] [11930] [depth= 1] . ( 22 sec) [ -47476.9580] [11930] [depth= 1] . ( 23 sec) [ -47476.1202] [11928] [depth= 1] . ( 23 sec) [ -47467.1181] [11928] [depth= 1] . ( 23 sec) [ -47459.2415] [11932] [depth= 2] . ( 24 sec) [ -47436.4088] [11927] [depth= 9] . ( 24 sec) [ -47391.4589] [11901] [depth= 8] . ( 25 sec) [ -47387.7312] [11887] [depth= 11] . ( 25 sec) [ -47387.5621] [11886] [depth= 3] . ( 25 sec) [ -47386.8764] [11885] [depth= 1] . ( 26 sec) [ -47385.9882] [11883] [depth= 1] . ( 26 sec) [ -47366.7822] [11883] [depth= 1] . ( 26 sec) [ -47278.9984] [11826] [depth= 13] . ( 27 sec) [ -47277.2530] [11819] [depth= 1] . ( 29 sec) [ -47277.1039] [11819] [depth= 1] . ( 29 sec) [ -47263.2412] [11818] [depth= 5] . ( 30 sec) [ -47245.5271] [11818] [depth= 4] . ( 31 sec) [ -47245.2961] [11820] [depth= 1] . ( 31 sec) [ -47245.2703] [11824] [depth= 1] . ( 31 sec) [ -47229.2765] [11820] [depth= 1] . ( 32 sec) [ -47213.7872] [11819] [depth= 2] . ( 33 sec) [ -47213.3059] [11823] [depth= 1] . ( 33 sec) [ -47202.0190] [11826] [depth= 1] . ( 34 sec) [ -47190.6177] [11822] [depth= 5] . ( 34 sec) [ -47183.9761] [11817] [depth= 5] . ( 34 sec) [ -47162.6090] [11809] [depth= 8] . ( 35 sec) [ -47077.9591] [11791] [depth= 5] . ( 35 sec) [ -47056.1472] [11794] [depth= 1] . ( 36 sec) [ -47042.7934] [11792] [depth= 2] . ( 36 sec) [ -47013.2861] [11772] [depth= 9] . ( 36 sec) [ -47010.0845] [11772] [depth= 1] . ( 37 sec) [ -47007.6030] [11772] [depth= 1] . ( 37 sec) [ -47002.8318] [11775] [depth= 1] . ( 38 sec) [ -46999.8823] [11773] [depth= 4] . ( 38 sec) [ -46998.9921] [11774] [depth= 1] . ( 38 sec) [ -46995.5993] [11773] [depth= 1] . ( 39 sec) [ -46990.4989] [11763] [depth= 2] . ( 40 sec) [ -46990.4047] [11761] [depth= 2] . ( 42 sec) [ -46989.1789] [11751] [depth= 1] . ( 42 sec) [ -46987.2270] [11761] [depth= 1] . ( 43 sec) [ -46981.8698] [11758] [depth= 3] . ( 43 sec) [ -46981.1751] [11759] [depth= 1] . ( 43 sec) [ -46976.1945] [11761] [depth= 1] . ( 44 sec) [ -46970.0349] [11760] [depth= 2] . ( 44 sec) [ -46958.7451] [11763] [depth= 1] . ( 46 sec) [ -46956.0903] [11761] [depth= 4] . ( 47 sec) [ -46955.0706] [11773] [depth= 1] . ( 47 sec) [ -46940.2629] [11763] [depth= 1] . ( 48 sec) [ -46939.6419] [11767] [depth= 3] . ( 48 sec) [ -46939.3588] [11765] [depth= 1] . ( 49 sec) [ -46937.5602] [11770] [depth= 1] . ( 49 sec) [ -46936.2531] [11770] [depth= 1] . ( 50 sec) [ -46935.2897] [11774] [depth= 1] . ( 50 sec) [ -46928.8433] [11773] [depth= 3] . ( 50 sec) [ -46925.2174] [11772] [depth= 2] . ( 51 sec) [ -46909.9662] [11770] [depth= 1] . ( 52 sec) [ -46908.3644] [11775] [depth= 1] . ( 53 sec) [ -46902.1095] [11777] [depth= 1] . ( 53 sec) [ -46891.9501] [11775] [depth= 2] . ( 53 sec) [ -46891.4367] [11773] [depth= 1] . ( 54 sec) [ -46887.7154] [11774] [depth= 1] . ( 55 sec) [ -46852.1532] [11775] [depth= 3] . ( 56 sec) [ -46848.9766] [11773] [depth= 1] . ( 56 sec) [ -46844.2634] [11774] [depth= 1] . ( 57 sec) [ -46843.0117] [11772] [depth= 2] . ( 57 sec) [ -46831.5598] [11763] [depth= 3] . ( 58 sec) [ -46817.7114] [11760] [depth= 3] . ( 58 sec) [ -46807.3465] [11760] [depth= 1] . ( 59 sec) [ -46805.1054] [11759] [depth= 3] . ( 59 sec) [ -46799.0419] [11758] [depth= 3] . ( 60 sec) [ -46798.7586] [11752] [depth= 2] . ( 60 sec) [ -46795.8347] [11752] [depth= 1] . ( 60 sec) [ -46794.0468] [11751] [depth= 2] . ( 61 sec) [ -46793.2122] [11756] [depth= 1] . ( 61 sec) [ -46771.2746] [11759] [depth= 1] . ( 61 sec) [ -46753.9905] [11764] [depth= 1] . ( 62 sec) [ -46753.3517] [11767] [depth= 1] . ( 62 sec) [ -46739.5565] [11758] [depth= 2] . ( 63 sec) [ -46722.7910] [11761] [depth= 3] . ( 63 sec) [ -46717.1900] [11756] [depth= 4] . ( 63 sec) [ -46709.3504] [11755] [depth= 1] . ( 64 sec) [ -46687.8379] [11753] [depth= 2] . ( 65 sec) [ -46686.0596] [11757] [depth= 1] . ( 65 sec) [ -46679.3202] [11756] [depth= 3] . ( 66 sec) [ -46675.4130] [11755] [depth= 1] . ( 66 sec) [ -46657.4736] [11751] [depth= 1] . ( 67 sec) [ -46643.4375] [11744] [depth= 3] . ( 68 sec) [ -46640.3501] [11743] [depth= 1] . ( 68 sec) [ -46638.4027] [11745] [depth= 1] . ( 69 sec) [ -46637.6696] [11745] [depth= 1] . ( 70 sec) [ -46634.3768] [11754] [depth= 1] . ( 70 sec) [ -46629.7901] [11745] [depth= 1] . ( 71 sec) [ -46628.9949] [11747] [depth= 1] . ( 72 sec) [ -46625.1438] [11743] [depth= 3] . ( 72 sec) [ -46622.9839] [11746] [depth= 1] . ( 72 sec) [ -46620.6754] [11749] [depth= 1] . ( 73 sec) [ -46618.3366] [11746] [depth= 1] . ( 75 sec) [ -46334.7809] [Branch lengths ] . ( 76 sec) [ -46313.0899] [Ts/ts ratio ][ 3.416738] . ( 77 sec) [ -46312.1637] [11746] [depth= 1] . ( 79 sec) [ -46308.5081] [11751] [depth= 1] . ( 81 sec) [ -46307.1504] [11753] [depth= 1] . ( 85 sec) [ -46301.1350] [11752] [depth= 2] . ( 87 sec) [ -46300.8419] [11764] [depth= 1] . ( 90 sec) [ -46300.8090] [11765] [depth= 1] . ( 90 sec) [ -46300.5063] [11765] [depth= 1] . ( 91 sec) [ -46300.3129] [11765] [depth= 1] . ( 91 sec) [ -46298.1585] [11763] [depth= 3] . ( 92 sec) [ -46296.4902] [11768] [depth= 1] . ( 92 sec) [ -46292.1695] [11768] [depth= 2] . ( 92 sec) [ -46266.3151] [11782] [depth= 1] . ( 95 sec) [ -46266.2741] [11782] [depth= 2] . ( 97 sec) [ -46265.1957] [11781] [depth= 2] . ( 98 sec) [ -46264.5727] [11781] [depth= 5] . ( 99 sec) [ -46264.3214] [11780] [depth= 2] . ( 101 sec) [ -46263.2854] [11778] [depth= 2] . ( 102 sec) [ -46245.2812] [11780] [depth= 1] . ( 102 sec) [ -46237.7987] [11777] [depth= 1] . ( 104 sec) [ -46237.2239] [11774] [depth= 2] . ( 106 sec) [ -46236.9106] [11774] [depth= 1] . ( 108 sec) [ -46235.5147] [11779] [depth= 2] . ( 109 sec) [ -46195.1926] [11769] [depth= 17] . ( 109 sec) [ -46192.7240] [11759] [depth= 3] . ( 110 sec) [ -46191.9439] [11752] [depth= 10] . ( 110 sec) [ -46191.4775] [11753] [depth= 1] . ( 111 sec) [ -46190.9422] [11753] [depth= 1] . ( 111 sec) [ -46188.2244] [11755] [depth= 1] . ( 112 sec) [ -46186.0947] [11758] [depth= 2] . ( 112 sec) [ -46184.4655] [11753] [depth= 1] . ( 113 sec) [ -46183.5681] [11753] [depth= 2] . ( 114 sec) [ -46183.1862] [11753] [depth= 3] . ( 117 sec) [ -46179.7479] [11743] [depth= 1] . ( 124 sec) [ -46179.6625] [11742] [depth= 1] . ( 124 sec) [ -46179.5629] [11745] [depth= 1] . ( 124 sec) [ -46175.9822] [11746] [depth= 1] . ( 129 sec) [ -46175.7277] [11746] [depth= 2] . ( 130 sec) [ -46174.1496] [11745] [depth= 1] . ( 131 sec) [ -46173.8277] [11743] [depth= 1] . ( 131 sec) [ -46173.2035] [11745] [depth= 1] . ( 131 sec) [ -46172.9963] [11744] [depth= 1] . ( 133 sec) [ -46172.2697] [11744] [depth= 1] . ( 133 sec) [ -46172.1966] [11749] [depth= 1] . ( 133 sec) [ -46170.7641] [11752] [depth= 1] . ( 134 sec) [ -46169.6489] [11755] [depth= 3] . ( 136 sec) [ -46169.5670] [11751] [depth= 1] . ( 137 sec) [ -46169.0661] [11753] [depth= 1] . ( 138 sec) [ -46168.4567] [11748] [depth= 2] . ( 139 sec) [ -46167.6379] [11746] [depth= 1] . ( 139 sec) [ -46167.4170] [11749] [depth= 1] . ( 140 sec) [ -46166.0605] [11748] [depth= 1] . ( 140 sec) [ -46165.1398] [11749] [depth= 1] . ( 141 sec) [ -46165.0933] [11748] [depth= 1] . ( 145 sec) [ -46164.7240] [11747] [depth= 1] . ( 145 sec) [ -46164.4748] [11747] [depth= 1] . ( 145 sec) [ -46162.8231] [11750] [depth= 1] . ( 146 sec) [ -46162.7256] [11751] [depth= 1] . ( 146 sec) [ -46162.7137] [11751] [depth= 1] . ( 150 sec) [ -46104.0706] [Branch lengths ] . ( 150 sec) [ -46102.3344] [Ts/ts ratio ][ 3.557198] . ( 151 sec) [ -46102.0175] [11751] [depth= 1] . ( 152 sec) [ -46101.9558] [11749] [depth= 1] . ( 152 sec) [ -46101.6744] [11751] [depth= 1] . ( 160 sec) [ -46095.8037] [11741] [depth= 2] . ( 165 sec) [ -46095.6151] [11740] [depth= 1] . ( 165 sec) [ -46095.4163] [11741] [depth= 1] . ( 166 sec) [ -46094.4118] [11753] [depth= 1] . ( 169 sec) [ -46094.3885] [11753] [depth= 2] . ( 174 sec) [ -46093.0935] [11754] [depth= 2] . ( 176 sec) [ -46091.9325] [11752] [depth= 1] . ( 179 sec) [ -46091.8415] [11752] [depth= 1] . ( 181 sec) [ -46091.6418] [11751] [depth= 3] . ( 184 sec) [ -46090.5749] [11753] [depth= 10] . ( 186 sec) [ -46089.9751] [11756] [depth= 1] . ( 188 sec) [ -46088.0577] [11757] [depth= 5] . ( 199 sec) [ -46087.4656] [11752] [depth= 1] . ( 199 sec) [ -46087.3259] [11750] [depth= 1] . ( 200 sec) [ -46085.8021] [11752] [depth= 1] . ( 202 sec) [ -46083.7867] [11752] [depth= 2] . ( 204 sec) [ -46083.5614] [11752] [depth= 1] . ( 215 sec) [ -46072.5069] [11754] [depth= 3] . ( 217 sec) [ -46072.4916] [11751] [depth= 1] . ( 218 sec) [ -46070.7562] [11749] [depth= 1] . ( 218 sec) [ -46070.1988] [11754] [depth= 1] . ( 226 sec) [ -46038.2857] [Branch lengths ] . ( 226 sec) [ -46037.2303] [Ts/ts ratio ][ 3.671565] . ( 227 sec) [ -46037.1478] [11754] [depth= 1] . ( 228 sec) [ -46037.1132] [11752] [depth= 1] . ( 240 sec) [ -46036.9616] [11752] [depth= 1] . ( 253 sec) [ -46035.0188] [11753] [depth= 2] . ( 256 sec) [ -46034.8901] [11753] [depth= 1] . ( 262 sec) [ -46033.4621] [11753] [depth= 7] . ( 264 sec) [ -46032.7076] [11755] [depth= 1] . ( 265 sec) [ -46031.4474] [11755] [depth= 1] . ( 284 sec) [ -46030.9685] [11751] [depth= 1] . ( 297 sec) [ -46030.4537] [11749] [depth= 1] . ( 297 sec) [ -46029.7879] [11752] [depth= 1] . ( 299 sec) [ -46029.5438] [11752] [depth= 1] . ( 300 sec) [ -46027.3492] [11751] [depth= 1] . ( 306 sec) [ -46014.6333] [Branch lengths ] . ( 307 sec) [ -46014.2217] [Ts/ts ratio ][ 3.744971] . ( 308 sec) [ -46014.1722] [11751] [depth= 1] . ( 311 sec) [ -46014.1207] [11753] [depth= 1] . ( 320 sec) [ -46013.8037] [11756] [depth= 2] . ( 347 sec) [ -46013.6850] [11756] [depth= 1] . ( 389 sec) [ -46008.5056] [Branch lengths ] . ( 389 sec) [ -46008.3832] [Ts/ts ratio ][ 3.785650] . ( 390 sec) [ -46008.3624] [11756] [depth= 1] . ( 392 sec) [ -46008.3383] [11754] [depth= 1] . ( 420 sec) [ -46008.2972] [11754] [depth= 1] . ( 473 sec) [ -46006.2476] [Branch lengths ] . ( 473 sec) [ -46006.1893] [Ts/ts ratio ][ 3.814084] . ( 478 sec) [ -46006.1770] [11756] [depth= 1] . ( 556 sec) [ -46005.2426] [Branch lengths ] . ( 557 sec) [ -46005.2183] [Ts/ts ratio ][ 3.832608] . ( 574 sec) [ -45999.7380] [11808] [depth= 4] . ( 579 sec) [ -45999.1037] [11833] [depth= 1] . ( 580 sec) [ -45996.6525] [11865] [depth= 1] . ( 596 sec) [ -45990.4600] [11874] [depth= 1] . ( 597 sec) [ -45986.6236] [11887] [depth= 1] . ( 598 sec) [ -45985.5809] [11887] [depth= 1] . ( 611 sec) [ -45984.8203] [11882] [depth= 1] . ( 645 sec) [ -45982.5678] [11887] [depth= 1] . ( 804 sec) [ -45976.8170] [Branch lengths ] . ( 805 sec) [ -45976.6945] [Ts/ts ratio ][ 3.874518] . ( 809 sec) [ -45975.4063] [11879] [depth= 1] . ( 1055 sec) [ -45973.0412] [Branch lengths ] . ( 1055 sec) [ -45973.0375] [Ts/ts ratio ][ 3.880696] . ( 1305 sec) [ -45971.6800] [Branch lengths ] . ( 1305 sec) [ -45971.6800] [Topology ] . ( 1311 sec) [ -45971.5971] [Topology ] . ( 1316 sec) [ -45971.5639] [Topology ] . ( 1322 sec) [ -45971.5431] [Topology ] . ( 1327 sec) [ -45971.5300] [Topology ] . ( 1333 sec) [ -45971.5210] [Topology ] . ( 1339 sec) [ -45971.5145] [Topology ] . ( 1339 sec) [ -45971.5029] [Ts/ts ratio ][ 3.893792] . ( 1339 sec) [ -45971.5029] [Topology ] . ( 1345 sec) [ -45971.4954] [Topology ] . ( 1350 sec) [ -45971.4899] [Topology ] . ( 1356 sec) [ -45971.4858] [Topology ] . ( 1362 sec) [ -45971.4826] [Topology ] . ( 1367 sec) [ -45971.4802] [Topology ] . ( 1373 sec) [ -45971.4782] [Topology ] . ( 1373 sec) [ -45971.4770] [Ts/ts ratio ][ 3.897686] . ( 1373 sec) [ -45971.4770] [Topology ] . ( 1379 sec) [ -45971.4750] [Topology ] . ( 1384 sec) [ -45971.4735] [Topology ] . ( 1390 sec) [ -45971.4722] [Topology ] . ( 1396 sec) [ -45971.4712] [Topology ] . ( 1401 sec) [ -45971.4703] [Topology ] . ( 1402 sec) [ -45971.4701] [Ts/ts ratio ][ 3.901583] . ( 1402 sec) [ -45971.4701] [Topology ] . ( 1407 sec) [ -45971.4691] [Topology ] . ( 1413 sec) [ -45971.4683] [Topology ] . ( 1414 sec) [ -45971.4683] [Ts/ts ratio ][ 3.901583] . ( 1414 sec) [ -45971.4683] [Topology ] . ( 1419 sec) [ -45971.4676] [Topology ] . ( 1420 sec) [ -45971.4676] [Ts/ts ratio ][ 3.901583] . Checking for NNIs, optimizing five branches... . ( 1473 sec) [ -45971.1918] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1526 sec) [ -45970.9725] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1579 sec) [ -45970.8588] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1632 sec) [ -45970.7766] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1685 sec) [ -45970.7431] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1738 sec) [ -45970.7409] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1791 sec) [ -45970.7311] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1843 sec) [ -45970.6264] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1897 sec) [ -45970.6094] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -45970.609430. . Launch bootstrap analysis on the most likely tree... . Non parametric bootstrap analysis [....................] 20/ 100 [....................] 40/ 100 [....................] 60/ 100 [....................] 80/ 100 [....................] 100/ 100 Graphics: 100 309.242203 1.000000 1.962492 67 26.625611 0.981000 0.561499 50 20.508650 0.941000 0.155081 30 0.639508 0.054000 0.061445 100 245.932926 1.000000 0.753336 100 257.451696 1.000000 0.730367 66 27.401206 0.970000 0.152591 48 10.237143 0.686000 0.095202 50 5.735828 0.685000 0.052914 100 50.076091 0.990000 0.099514 72 17.054725 0.948000 0.075175 100 135.317635 1.000000 0.223713 38 0.035878 0.000000 0.000535 62 60.404839 0.999000 0.027531 71 17.568990 0.936000 0.059980 85 29.714162 0.907000 0.087692 100 93.136681 1.000000 0.182760 24 4.259690 0.590000 0.118218 100 139.316906 1.000000 0.501948 38 -1.000000 0.000000 0.000000 33 1.371080 0.117000 0.111401 36 2.826405 0.242000 0.194939 71 35.683996 0.974000 0.190890 75 55.431364 0.996000 0.263916 98 45.313728 0.987000 0.125238 99 24.483510 0.976000 0.053256 100 60.568668 0.998000 0.066257 94 23.761427 0.956000 0.053440 28 1.802842 0.279000 0.042102 93 47.460292 0.990000 0.158914 20 3.187727 0.564000 0.032591 3 2.862313 0.716000 0.027656 97 138.409031 1.000000 0.217508 12 0.119147 0.000000 0.008082 64 16.879670 0.926000 0.074074 37 2.863821 0.350000 0.027009 19 0.298748 0.034000 0.018824 100 117.150858 1.000000 0.114136 56 2.382618 0.450000 0.079889 26 2.902944 0.559000 0.035370 99 60.010525 0.996000 0.154032 99 40.909677 0.992000 0.091922 99 24.266760 0.978000 0.035604 88 6.247181 0.842000 0.035128 92 25.972165 0.940000 0.035920 42 23.235527 0.979000 0.087599 43 14.896355 0.915000 0.062970 68 20.534999 0.947000 0.080423 57 9.609269 0.876000 0.039922 37 3.138402 0.297000 0.033175 96 94.856382 1.000000 0.127951 100 74.074923 0.999000 0.062486 100 48.165957 0.995000 0.026601 95 21.767106 0.969000 0.040472 37 0.090748 0.000000 0.005581 100 165.038429 1.000000 0.064584 88 29.993619 0.972000 0.021138 38 2.099873 0.358000 0.032051 96 41.642949 0.992000 0.115638 100 81.509116 1.000000 0.188220 82 11.157264 0.923000 0.086770 100 63.611219 0.994000 0.157878 27 0.025558 0.000000 0.021213 74 25.656607 0.975000 0.265710 59 29.295757 0.970000 0.069526 58 20.003453 0.921000 0.060136 92 6.260307 0.870000 0.120058 37 1.070267 0.647000 0.049372 24 7.016411 0.882000 0.056287 7 1.349469 0.318000 0.014390 15 7.610276 0.717000 0.043462 96 118.248181 1.000000 0.159384 64 16.120035 0.923000 0.075789 99 60.013144 0.998000 0.117063 71 5.103466 0.701000 0.029511 99 60.555083 0.998000 0.099779 89 14.315065 0.930000 0.060912 19 1.115634 0.208000 0.021255 82 32.299132 0.963000 0.086366 18 23.366519 0.940000 0.054803 22 20.008381 0.953000 0.050588 16 12.555604 0.889000 0.050949 16 0.233411 0.553000 0.008760 69 53.746574 0.990000 0.111662 4 0.471407 0.063000 0.023559 12 4.152371 0.665000 0.033592 8 0.050550 0.000000 0.002202 17 34.614933 0.955000 0.037955 8 3.868496 0.792000 0.008422 49 11.517290 0.898000 0.040323 92 94.192519 1.000000 0.166983 100 23.559728 0.975000 0.064420 100 58.832049 0.997000 0.055888 100 92.793010 0.999000 0.042562 16 6.410152 0.856000 0.025234 16 1.847339 0.591000 0.025708 100 153.805076 1.000000 0.187318 61 4.080801 0.855000 0.037692 99 66.356907 1.000000 0.153190 27 3.814199 0.785000 0.032505 99 22.421968 0.972000 0.089912 100 89.258671 1.000000 0.091533 79 0.066930 0.000000 0.004007 78 8.989013 0.872000 0.008881 18 1.365528 0.210000 0.025298 65 20.082491 0.976000 0.185537 92 119.447488 1.000000 0.123362 98 88.692096 0.998000 0.069432 89 22.120498 0.929000 0.029129 98 45.655851 0.982000 0.044962 99 40.641082 0.981000 0.022636 49 10.146027 0.905000 0.047336 100 158.527260 1.000000 0.217783 25 0.387204 0.040000 0.011798 41 6.215467 0.827000 0.007192 83 4.108678 0.948000 0.013840 69 14.169511 0.915000 0.060881 87 56.085856 0.989000 0.106534 82 51.712620 0.995000 0.082927 84 27.236437 0.982000 0.045618 98 67.707636 0.998000 0.082328 61 11.139949 0.872000 0.045034 100 96.313243 1.000000 0.134818 78 30.437032 0.964000 0.042079 59 8.443193 0.735000 0.025813 40 2.608583 0.773000 0.031534 27 11.522784 0.910000 0.039222 16 2.893139 0.759000 0.013309 23 3.106419 0.540000 0.036053 98 60.745580 1.000000 0.150749 34 1.483761 0.189000 0.040953 50 2.050341 0.310000 0.038212 100 34.439436 0.983000 0.095986 84 9.103169 0.818000 0.025666 23 0.249109 0.017000 0.026330 76 19.262694 0.965000 0.127621 . Printing the most likely tree in file 'nucleic_M2623_139x1044_2006.phy_phyml_tree.txt'... . Time used 46h19m57s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo