.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1882_8x705_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 100 . Compute approximate likelihood ratio test : no . Model name : LG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : 0.500000 . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : no . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 524 patterns found. (out of a total of 705 sites) . 233 sites without polymorphism (33.05%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 8Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -6269.9175] [ 936] [depth= 1] . ( 0 sec) [ -6232.0542] [ 932] [depth= 1] . ( 1 sec) [ -6226.4251] [ 932] [depth= 1] . ( 3 sec) [ -6218.3945] [Branch lengths ] . ( 6 sec) [ -6217.4476] [Branch lengths ] . ( 6 sec) [ -6217.4476] [Topology ] . ( 7 sec) [ -6217.3254] [Topology ] . ( 8 sec) [ -6217.2798] [Topology ] . ( 8 sec) [ -6217.2614] [Topology ] . ( 9 sec) [ -6217.2536] [Topology ] . ( 10 sec) [ -6217.2503] [Topology ] . ( 11 sec) [ -6217.2489] [Topology ] . ( 11 sec) [ -6217.2489] [Topology ] . ( 12 sec) [ -6217.2483] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6217.248275. . Launch bootstrap analysis on the most likely tree... . Non parametric bootstrap analysis [....................] 20/ 100 [....................] 40/ 100 [....................] 60/ 100 [....................] 80/ 100 [....................] 100/ 100 Graphics: 69 6.493699 0.817000 0.249022 100 359.876729 1.000000 1.796835 100 21.019979 0.966000 0.148610 93 8.465293 0.884000 0.082368 99 19.183294 0.941000 0.021779 . Printing the most likely tree in file 'proteic_M1882_8x705_2004.phy_phyml_tree.txt'... . Time used 0h35m33s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo