.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2344_7x232_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 100 . Compute approximate likelihood ratio test : no . Model name : LG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : 0.500000 . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : no . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 145 patterns found. (out of a total of 232 sites) . 124 sites without polymorphism (53.45%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 2Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 2 sec) [ -1594.9443] [Branch lengths ] . ( 2 sec) [ -1594.9443] [Topology ] . ( 2 sec) [ -1594.8112] [Topology ] . ( 2 sec) [ -1594.8003] [Topology ] . ( 2 sec) [ -1594.7975] [Topology ] . ( 2 sec) [ -1594.7968] [Topology ] . ( 2 sec) [ -1594.7968] [Topology ] . ( 2 sec) [ -1594.7966] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -1594.796565. . Launch bootstrap analysis on the most likely tree... . Non parametric bootstrap analysis [....................] 20/ 100 [....................] 40/ 100 [....................] 60/ 100 [....................] 80/ 100 [....................] 100/ 100 Graphics: 100 74.468478 1.000000 0.325363 100 31.874315 0.984000 0.189754 78 11.599855 0.842000 0.039896 77 4.760631 0.742000 0.024552 . Printing the most likely tree in file 'proteic_M2344_7x232_2005.phy_phyml_tree.txt'... . Time used 0h6m16s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo