.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2639_19x331_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 100 . Compute approximate likelihood ratio test : no . Model name : LG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : 0.500000 . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : no . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 227 patterns found. (out of a total of 331 sites) . 124 sites without polymorphism (37.46%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 10Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -5787.4397] [ 942] [depth= 1] . ( 4 sec) [ -5778.5339] [ 942] [depth= 1] . ( 4 sec) [ -5774.4096] [ 944] [depth= 1] . ( 4 sec) [ -5773.8341] [ 942] [depth= 1] . ( 6 sec) [ -5772.4412] [ 942] [depth= 1] . ( 7 sec) [ -5772.1556] [ 943] [depth= 2] . ( 8 sec) [ -5769.8060] [ 942] [depth= 1] . ( 8 sec) [ -5752.9304] [Branch lengths ] . ( 20 sec) [ -5751.5992] [Branch lengths ] . ( 21 sec) [ -5751.5992] [Topology ] . ( 21 sec) [ -5751.4635] [Topology ] . ( 22 sec) [ -5751.4157] [Topology ] . ( 23 sec) [ -5751.3908] [Topology ] . ( 24 sec) [ -5751.3769] [Topology ] . ( 25 sec) [ -5751.3690] [Topology ] . ( 26 sec) [ -5751.3644] [Topology ] . ( 26 sec) [ -5751.3644] [Topology ] . ( 27 sec) [ -5751.3617] [Topology ] . ( 28 sec) [ -5751.3602] [Topology ] . ( 29 sec) [ -5751.3592] [Topology ] . ( 29 sec) [ -5751.3592] [Topology ] . ( 30 sec) [ -5751.3587] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5751.358697. . Launch bootstrap analysis on the most likely tree... . Non parametric bootstrap analysis [....................] 20/ 100 [....................] 40/ 100 [....................] 60/ 100 [....................] 80/ 100 [....................] 100/ 100 Graphics: 100 84.404514 1.000000 0.211504 100 103.255755 0.999000 0.236138 79 16.294525 0.861000 0.060038 17 1.491865 0.570000 0.020546 100 62.765030 0.994000 0.118814 100 89.429771 0.999000 0.130291 15 11.025017 0.870000 0.032134 100 194.767986 1.000000 0.203458 73 14.388711 0.864000 0.037947 18 1.642057 0.116000 0.048322 78 47.148406 0.993000 0.109100 13 2.842165 0.435000 0.033648 13 3.835774 0.442000 0.041265 70 9.378433 0.890000 0.062017 97 37.917132 0.990000 0.108341 95 20.745242 0.929000 0.059662 . Printing the most likely tree in file 'proteic_M2639_19x331_2006.phy_phyml_tree.txt'... . Time used 1h15m20s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo