.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2641_18x326_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 100 . Compute approximate likelihood ratio test : no . Model name : LG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : 0.500000 . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : no . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 243 patterns found. (out of a total of 326 sites) . 100 sites without polymorphism (30.67%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 10Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -5203.2979] [ 831] [depth= 1] . ( 7 sec) [ -5202.6545] [ 831] [depth= 1] . ( 7 sec) [ -5199.9324] [ 830] [depth= 2] . ( 8 sec) [ -5194.2892] [ 829] [depth= 1] . ( 9 sec) [ -5194.0186] [ 831] [depth= 1] . ( 10 sec) [ -5169.7427] [Branch lengths ] . ( 24 sec) [ -5167.0446] [Branch lengths ] . ( 24 sec) [ -5167.0446] [Topology ] . ( 25 sec) [ -5166.2002] [Topology ] . ( 26 sec) [ -5165.7050] [Topology ] . ( 26 sec) [ -5165.4990] [Topology ] . ( 27 sec) [ -5165.3796] [Topology ] . ( 28 sec) [ -5165.3056] [Topology ] . ( 29 sec) [ -5165.2586] [Topology ] . ( 30 sec) [ -5165.2283] [Topology ] . ( 30 sec) [ -5165.2283] [Topology ] . ( 31 sec) [ -5165.2087] [Topology ] . ( 32 sec) [ -5165.1958] [Topology ] . ( 33 sec) [ -5165.1874] [Topology ] . ( 34 sec) [ -5165.1818] [Topology ] . ( 35 sec) [ -5165.1781] [Topology ] . ( 36 sec) [ -5165.1756] [Topology ] . ( 36 sec) [ -5165.1756] [Topology ] . ( 37 sec) [ -5165.1740] [Topology ] . ( 37 sec) [ -5165.1729] [Topology ] . ( 38 sec) [ -5165.1722] [Topology ] . ( 38 sec) [ -5165.1722] [Topology ] . ( 39 sec) [ -5165.1717] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5165.171663. . Launch bootstrap analysis on the most likely tree... . Non parametric bootstrap analysis [....................] 20/ 100 [....................] 40/ 100 [....................] 60/ 100 [....................] 80/ 100 [....................] 100/ 100 Graphics: 100 83.932457 1.000000 0.200529 100 70.181798 0.995000 0.186618 60 13.517605 0.911000 0.059982 80 22.263260 0.946000 0.060905 100 148.934695 1.000000 0.224962 99 51.504913 0.994000 0.078740 40 0.394250 0.067000 0.002700 91 21.653130 0.944000 0.045811 64 10.303651 0.789000 0.045535 97 44.957663 0.987000 0.091028 24 2.280439 0.225000 0.043974 100 83.293843 1.000000 0.160212 100 40.353570 0.986000 0.070143 46 10.986943 0.876000 0.051499 100 43.407678 0.986000 0.138291 . Printing the most likely tree in file 'proteic_M2641_18x326_2006.phy_phyml_tree.txt'... . Time used 1h7m19s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo