.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1373_23x392_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 206 patterns found. (out of a total of 392 sites) . 200 sites without polymorphism (51.02%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 11Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -3571.4717] [Alpha ][ 0.500960] . ( 1 sec) [ -3571.4717] [Topology ] . ( 2 sec) [ -3544.9622] [Topology ] . ( 3 sec) [ -3540.6937] [Topology ] . ( 5 sec) [ -3539.9495] [Topology ] . ( 6 sec) [ -3539.6826] [Topology ] . ( 7 sec) [ -3539.5806] [Topology ] . ( 8 sec) [ -3539.5407] [Topology ] . ( 9 sec) [ -3539.5243] [Topology ] . ( 10 sec) [ -3539.5174] [Topology ] . Checking for NNIs, optimizing five branches... . ( 17 sec) [ -3539.5007] [Alpha ][ 0.512319] . ( 17 sec) [ -3539.5007] [Topology ] . ( 18 sec) [ -3539.4969] [Topology ] . ( 19 sec) [ -3539.4953] [Topology ] . ( 20 sec) [ -3539.4947] [Topology ] . Checking for NNIs, optimizing five branches... . ( 27 sec) [ -3539.4946] [Alpha ][ 0.512900] . ( 28 sec) [ -3539.4946] [Topology ] . ( 29 sec) [ -3539.4943] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 43 sec) [ -3571.4717] [Alpha ][ 0.500960] . ( 45 sec) [ -3555.7984] [ 459] [depth= 1] . ( 47 sec) [ -3555.0067] [ 455] [depth= 8] . ( 50 sec) [ -3548.9171] [ 456] [depth= 1] . ( 50 sec) [ -3547.0823] [ 456] [depth= 1] . ( 52 sec) [ -3543.5837] [ 455] [depth= 2] . ( 65 sec) [ -3542.9287] [ 455] [depth= 1] . ( 70 sec) [ -3542.7076] [ 455] [depth= 1] . ( 71 sec) [ -3542.6975] [ 455] [depth= 1] . ( 71 sec) [ -3542.6463] [ 455] [depth= 1] . ( 78 sec) [ -3542.3849] [ 455] [depth= 1] . ( 92 sec) [ -3542.2916] [ 455] [depth= 1] . ( 100 sec) [ -3535.7494] [Branch lengths ] . ( 100 sec) [ -3535.7440] [Alpha ][ 0.507815] . ( 116 sec) [ -3535.1492] [ 455] [depth= 5] . ( 127 sec) [ -3533.5888] [ 458] [depth= 6] . ( 152 sec) [ -3533.5785] [ 458] [depth= 1] . ( 159 sec) [ -3533.5681] [ 458] [depth= 2] . ( 176 sec) [ -3533.1132] [Branch lengths ] . ( 177 sec) [ -3533.1122] [Alpha ][ 0.504795] . ( 269 sec) [ -3533.0609] [Branch lengths ] . ( 269 sec) [ -3533.0609] [Topology ] . ( 270 sec) [ -3533.0579] [Topology ] . ( 271 sec) [ -3533.0570] [Topology ] . ( 271 sec) [ -3533.0568] [Alpha ][ 0.506275] . ( 271 sec) [ -3533.0568] [Topology ] . ( 272 sec) [ -3533.0564] [Topology ] . ( 272 sec) [ -3533.0564] [Alpha ][ 0.506275] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -3539.494307 . Log likelihood obtained after SPR moves : -3533.056383 . Log likelihood of the current tree: -3533.056383. . Printing the most likely tree in file 'proteic_M1373_23x392_2003.phy_phyml_tree.txt'... . Time used 0h4m40s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 273.24user 0.00system 4:39.98elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps