.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1379_9x1557_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 720 patterns found. (out of a total of 1557 sites) . 838 sites without polymorphism (53.82%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 13Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -11696.3996] [Alpha ][ 0.540948] . ( 0 sec) [ -11696.3996] [Topology ] . ( 1 sec) [ -11646.2698] [Topology ] . ( 2 sec) [ -11638.4399] [Topology ] . ( 3 sec) [ -11637.5077] [Topology ] . ( 4 sec) [ -11637.6377] [Topology ] . Moving backward . ( 4 sec) [ -11636.2660] [Topology ] . ( 6 sec) [ -11635.5962] [Topology ] . ( 7 sec) [ -11635.4972] [Topology ] . ( 8 sec) [ -11635.4733] [Topology ] . ( 9 sec) [ -11635.4666] [Topology ] . Checking for NNIs, optimizing five branches... . ( 17 sec) [ -11634.5566] [Alpha ][ 0.600647] . ( 17 sec) [ -11634.5566] [Topology ] . ( 18 sec) [ -11634.5441] [Topology ] . ( 19 sec) [ -11634.5430] [Topology ] . ( 20 sec) [ -11634.5427] [Topology ] . Checking for NNIs, optimizing five branches... . ( 28 sec) [ -11634.5425] [Alpha ][ 0.601587] . ( 28 sec) [ -11634.5425] [Topology ] . ( 29 sec) [ -11634.5424] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 43 sec) [ -11696.3996] [Alpha ][ 0.540948] . ( 45 sec) [ -11691.9204] [ 1351] [depth= 1] . ( 45 sec) [ -11677.2385] [ 1351] [depth= 1] . ( 45 sec) [ -11664.9913] [ 1354] [depth= 1] . ( 46 sec) [ -11640.4902] [ 1348] [depth= 4] . ( 47 sec) [ -11636.3286] [ 1349] [depth= 1] . ( 51 sec) [ -11621.4755] [Branch lengths ] . ( 52 sec) [ -11620.6479] [Alpha ][ 0.598071] . ( 61 sec) [ -11620.1700] [Branch lengths ] . ( 61 sec) [ -11620.1700] [Topology ] . ( 62 sec) [ -11620.1526] [Topology ] . ( 63 sec) [ -11620.1491] [Topology ] . ( 64 sec) [ -11620.1482] [Topology ] . ( 65 sec) [ -11620.1482] [Alpha ][ 0.598071] . ( 65 sec) [ -11620.1482] [Topology ] . ( 66 sec) [ -11620.1479] [Topology ] . ( 66 sec) [ -11620.1479] [Alpha ][ 0.598071] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -11634.542422 . Log likelihood obtained after SPR moves : -11620.147876 . Log likelihood of the current tree: -11620.147876. . Printing the most likely tree in file 'proteic_M1379_9x1557_2003.phy_phyml_tree.txt'... . Time used 0h1m16s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 74.05user 0.00system 1:15.90elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps