.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1381_9x1557_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 695 patterns found. (out of a total of 1557 sites) . 829 sites without polymorphism (53.24%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 12Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -12145.2942] [Alpha ][ 0.516381] . ( 1 sec) [ -12145.2942] [Topology ] . ( 1 sec) [ -12105.5625] [Topology ] . ( 2 sec) [ -12101.4516] [Topology ] . ( 3 sec) [ -12100.5701] [Topology ] . ( 4 sec) [ -12100.3221] [Topology ] . ( 5 sec) [ -12100.2474] [Topology ] . ( 6 sec) [ -12100.2239] [Topology ] . Checking for NNIs, optimizing five branches... . ( 13 sec) [ -12099.2600] [Alpha ][ 0.572384] . ( 14 sec) [ -12099.2600] [Topology ] . ( 14 sec) [ -12099.2253] [Topology ] . ( 15 sec) [ -12099.2175] [Topology ] . ( 16 sec) [ -12099.2152] [Topology ] . ( 17 sec) [ -12099.2145] [Topology ] . Checking for NNIs, optimizing five branches... . ( 24 sec) [ -12099.2138] [Alpha ][ 0.573859] . ( 24 sec) [ -12099.2138] [Topology ] . ( 25 sec) [ -12099.2136] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 39 sec) [ -12145.2942] [Alpha ][ 0.516381] . ( 42 sec) [ -12144.5726] [ 1445] [depth= 1] . ( 42 sec) [ -12137.3493] [ 1446] [depth= 1] . ( 44 sec) [ -12136.2702] [ 1449] [depth= 1] . ( 45 sec) [ -12109.0248] [ 1447] [depth= 4] . ( 45 sec) [ -12107.1936] [ 1435] [depth= 2] . ( 45 sec) [ -12104.4152] [ 1441] [depth= 1] . ( 46 sec) [ -12096.2444] [ 1435] [depth= 1] . ( 46 sec) [ -12085.3919] [Branch lengths ] . ( 46 sec) [ -12084.5912] [Alpha ][ 0.567344] . ( 48 sec) [ -12081.3240] [ 1439] [depth= 1] . ( 51 sec) [ -12078.1403] [Branch lengths ] . ( 52 sec) [ -12078.1389] [Alpha ][ 0.569594] . ( 57 sec) [ -12078.0023] [Branch lengths ] . ( 57 sec) [ -12078.0023] [Topology ] . ( 58 sec) [ -12077.9982] [Topology ] . ( 59 sec) [ -12077.9975] [Topology ] . ( 59 sec) [ -12077.9975] [Alpha ][ 0.569594] . ( 59 sec) [ -12077.9975] [Topology ] . ( 60 sec) [ -12077.9973] [Topology ] . ( 60 sec) [ -12077.9973] [Alpha ][ 0.569594] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -12099.213554 . Log likelihood obtained after SPR moves : -12077.997340 . Log likelihood of the current tree: -12077.997340. . Printing the most likely tree in file 'proteic_M1381_9x1557_2003.phy_phyml_tree.txt'... . Time used 0h1m9s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 67.29user 0.00system 1:08.80elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps