.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1383_11x1561_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 753 patterns found. (out of a total of 1561 sites) . 798 sites without polymorphism (51.12%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 17Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -13794.2183] [Alpha ][ 0.500960] . ( 1 sec) [ -13794.2183] [Topology ] . ( 2 sec) [ -13736.8319] [Topology ] . ( 3 sec) [ -13731.9263] [Topology ] . ( 5 sec) [ -13730.7630] [Topology ] . ( 6 sec) [ -13730.3890] [Topology ] . ( 7 sec) [ -13730.2582] [Topology ] . ( 8 sec) [ -13730.2107] [Topology ] . Checking for NNIs, optimizing five branches... . ( 18 sec) [ -13730.1591] [Alpha ][ 0.511243] . ( 18 sec) [ -13730.1591] [Topology ] . ( 20 sec) [ -13730.1343] [Topology ] . ( 21 sec) [ -13730.1252] [Topology ] . ( 22 sec) [ -13730.1219] [Topology ] . ( 23 sec) [ -13730.1206] [Topology ] . ( 25 sec) [ -13730.1201] [Topology ] . Checking for NNIs, optimizing five branches... . ( 35 sec) [ -13730.1192] [Alpha ][ 0.512575] . ( 35 sec) [ -13730.1192] [Topology ] . ( 36 sec) [ -13730.1190] [Topology ] . Checking for NNIs, optimizing five branches... . ( 46 sec) [ -13730.1190] [Alpha ][ 0.512575] . ( 46 sec) [ -13730.1190] [Topology ] . ( 47 sec) [ -13730.1189] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 67 sec) [ -13794.2183] [Alpha ][ 0.500960] . ( 68 sec) [ -13782.5689] [ 1759] [depth= 5] . ( 69 sec) [ -13745.2157] [ 1756] [depth= 4] . ( 70 sec) [ -13744.7190] [ 1754] [depth= 1] . ( 71 sec) [ -13742.9184] [ 1759] [depth= 2] . ( 71 sec) [ -13741.4080] [ 1760] [depth= 1] . ( 72 sec) [ -13737.0392] [ 1758] [depth= 1] . ( 72 sec) [ -13732.1008] [ 1753] [depth= 3] . ( 73 sec) [ -13730.2973] [ 1753] [depth= 1] . ( 73 sec) [ -13726.6106] [ 1751] [depth= 1] . ( 74 sec) [ -13721.0602] [ 1750] [depth= 1] . ( 75 sec) [ -13705.6773] [Branch lengths ] . ( 75 sec) [ -13705.6657] [Alpha ][ 0.506004] . ( 86 sec) [ -13704.7725] [Branch lengths ] . ( 86 sec) [ -13704.7725] [Topology ] . ( 87 sec) [ -13704.7277] [Topology ] . ( 88 sec) [ -13704.7155] [Topology ] . ( 90 sec) [ -13704.7110] [Topology ] . ( 91 sec) [ -13704.7092] [Topology ] . ( 92 sec) [ -13704.7085] [Topology ] . ( 92 sec) [ -13704.6985] [Alpha ][ 0.510703] . ( 93 sec) [ -13704.6985] [Topology ] . ( 94 sec) [ -13704.6978] [Topology ] . ( 94 sec) [ -13704.6978] [Alpha ][ 0.510703] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -13730.118863 . Log likelihood obtained after SPR moves : -13704.697769 . Log likelihood of the current tree: -13704.697769. . Printing the most likely tree in file 'proteic_M1383_11x1561_2003.phy_phyml_tree.txt'... . Time used 0h1m45s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 102.42user 0.00system 1:45.17elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps