.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1385_11x530_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 312 patterns found. (out of a total of 530 sites) . 226 sites without polymorphism (42.64%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 7Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -5642.0556] [Alpha ][ 0.522309] . ( 1 sec) [ -5642.0556] [Topology ] . ( 1 sec) [ -5615.4964] [Topology ] . ( 2 sec) [ -5612.0959] [Topology ] . ( 2 sec) [ -5611.4656] [Topology ] . ( 3 sec) [ -5611.3011] [Topology ] . ( 3 sec) [ -5611.2430] [Topology ] . ( 4 sec) [ -5611.2203] [Topology ] . ( 4 sec) [ -5611.2109] [Topology ] . ( 5 sec) [ -5611.2070] [Topology ] . Checking for NNIs, optimizing five branches... . ( 9 sec) [ -5610.8025] [Topology ] . ( 9 sec) [ -5609.5704] [Alpha ][ 0.608297] . ( 9 sec) [ -5609.5704] [Topology ] . ( 10 sec) [ -5609.4986] [Topology ] . ( 10 sec) [ -5609.4808] [Topology ] . ( 11 sec) [ -5609.4741] [Topology ] . ( 11 sec) [ -5609.4715] [Topology ] . ( 12 sec) [ -5609.4704] [Topology ] . ( 12 sec) [ -5609.4699] [Topology ] . Checking for NNIs, optimizing five branches... . ( 16 sec) [ -5609.4666] [Alpha ][ 0.613307] . ( 16 sec) [ -5609.4666] [Topology ] . ( 17 sec) [ -5609.4661] [Topology ] . Checking for NNIs, optimizing five branches... . ( 21 sec) [ -5609.4661] [Alpha ][ 0.613307] . ( 21 sec) [ -5609.4661] [Topology ] . ( 22 sec) [ -5609.4659] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 30 sec) [ -5642.0556] [Alpha ][ 0.522309] . ( 30 sec) [ -5637.6028] [ 810] [depth= 1] . ( 30 sec) [ -5634.9800] [ 810] [depth= 2] . ( 31 sec) [ -5629.0229] [ 810] [depth= 2] . ( 31 sec) [ -5626.5004] [ 808] [depth= 2] . ( 31 sec) [ -5622.7591] [ 810] [depth= 1] . ( 31 sec) [ -5619.9301] [ 811] [depth= 1] . ( 39 sec) [ -5611.6151] [Branch lengths ] . ( 39 sec) [ -5610.5402] [Alpha ][ 0.603118] . ( 54 sec) [ -5609.9095] [Branch lengths ] . ( 54 sec) [ -5609.9095] [Topology ] . ( 55 sec) [ -5609.8621] [Topology ] . ( 55 sec) [ -5609.8492] [Topology ] . ( 56 sec) [ -5609.8441] [Topology ] . ( 56 sec) [ -5609.8421] [Topology ] . ( 57 sec) [ -5609.8412] [Topology ] . ( 57 sec) [ -5609.8201] [Alpha ][ 0.615160] . ( 57 sec) [ -5609.8201] [Topology ] . ( 58 sec) [ -5609.8187] [Topology ] . ( 58 sec) [ -5609.8181] [Topology ] . ( 58 sec) [ -5609.8181] [Alpha ][ 0.615892] . ( 58 sec) [ -5609.8181] [Topology ] . ( 59 sec) [ -5609.8178] [Topology ] . ( 59 sec) [ -5609.8178] [Alpha ][ 0.615892] . Checking for NNIs, optimizing five branches... . ( 63 sec) [ -5609.4780] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -5609.465950 . Log likelihood obtained after SPR moves : -5609.477962 . Log likelihood of the current tree: -5609.465950. . Printing the most likely tree in file 'proteic_M1385_11x530_2003.phy_phyml_tree.txt'... . Time used 0h1m7s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 66.37user 0.00system 1:07.00elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps