.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1812_34x176_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 173 patterns found. (out of a total of 176 sites) . 16 sites without polymorphism (9.09%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 14Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -5450.8068] [Alpha ][ 1.505579] . ( 0 sec) [ -5450.8068] [Topology ] . ( 1 sec) [ -5428.0477] [Topology ] . ( 3 sec) [ -5424.1790] [Topology ] . ( 4 sec) [ -5422.1045] [Topology ] . ( 6 sec) [ -5421.4064] [Topology ] . ( 7 sec) [ -5421.1991] [Topology ] . ( 9 sec) [ -5421.1186] [Topology ] . ( 10 sec) [ -5421.0845] [Topology ] . ( 12 sec) [ -5421.0693] [Topology ] . ( 13 sec) [ -5421.0622] [Topology ] . Checking for NNIs, optimizing five branches... . ( 24 sec) [ -5420.7479] [Topology ] . ( 24 sec) [ -5420.5957] [Alpha ][ 1.611532] . ( 24 sec) [ -5420.5957] [Topology ] . ( 26 sec) [ -5420.5417] [Topology ] . ( 27 sec) [ -5420.5324] [Topology ] . ( 29 sec) [ -5420.5297] [Topology ] . ( 30 sec) [ -5420.5288] [Topology ] . Checking for NNIs, optimizing five branches... . ( 41 sec) [ -5420.5287] [Alpha ][ 1.614399] . ( 41 sec) [ -5420.5287] [Topology ] . ( 43 sec) [ -5420.5283] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 64 sec) [ -5450.8068] [Alpha ][ 1.505579] . ( 70 sec) [ -5450.0189] [ 1012] [depth= 1] . ( 71 sec) [ -5448.9229] [ 1012] [depth= 1] . ( 71 sec) [ -5448.5154] [ 1012] [depth= 1] . ( 71 sec) [ -5448.4366] [ 1008] [depth= 1] . ( 73 sec) [ -5447.8104] [ 1010] [depth= 1] . ( 74 sec) [ -5442.4187] [ 1008] [depth= 1] . ( 79 sec) [ -5442.0670] [ 1009] [depth= 1] . ( 79 sec) [ -5441.3342] [ 1008] [depth= 1] . ( 87 sec) [ -5440.1143] [ 1008] [depth= 1] . ( 87 sec) [ -5438.2939] [ 1005] [depth= 1] . ( 89 sec) [ -5423.1735] [Branch lengths ] . ( 90 sec) [ -5423.0919] [Alpha ][ 1.584207] . ( 96 sec) [ -5422.7747] [ 1006] [depth= 1] . ( 117 sec) [ -5421.0139] [Branch lengths ] . ( 117 sec) [ -5420.9977] [Alpha ][ 1.619858] . ( 145 sec) [ -5420.8880] [Branch lengths ] . ( 145 sec) [ -5420.8880] [Topology ] . ( 146 sec) [ -5420.8765] [Topology ] . ( 148 sec) [ -5420.8733] [Topology ] . ( 149 sec) [ -5420.8719] [Topology ] . ( 151 sec) [ -5420.8713] [Topology ] . ( 151 sec) [ -5420.8709] [Alpha ][ 1.625216] . ( 151 sec) [ -5420.8709] [Topology ] . ( 152 sec) [ -5420.8706] [Topology ] . ( 153 sec) [ -5420.8706] [Alpha ][ 1.625216] . Checking for NNIs, optimizing five branches... . ( 163 sec) [ -5420.5862] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -5420.528259 . Log likelihood obtained after SPR moves : -5420.586153 . Log likelihood of the current tree: -5420.528259. . Printing the most likely tree in file 'proteic_M1812_34x176_2004.phy_phyml_tree.txt'... . Time used 0h2m54s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 174.10user 0.00system 2:54.81elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps